Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl

ABRA2

Embeddable genomic visualization component based on the Integrative Genomics Viewer

Mutation detection using GATK4 best practices and latest RNA editing filters resources. Works with both Hg38 and Hg19

Serverless authentication solution to protect your website or Amplify application

Utils for streaming large files (S3, HDFS, gzip, bz2...)

Tools and sample code provided by AWS Premium Support.

Scalable Nucleotide Alignment Program -- a fast and accurate read aligner for high-throughput sequencing data

Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling

diploid SNV caller for error-prone reads

Ultrafast consensus module for raw de novo genome assembly of long uncorrected reads

Versatile open-source tool for microbiome analysis

The next version of bwa-mem

Test data to be used for automated testing with the nf-core pipelines

Benchmarking of long-read assembly tools for bacterial whole genomes

Data and analysis for NA12878 genome on nanopore

A tool for the calculation of RNA-editing index for RNA seq data

Multi-sample somatic variant caller

Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence

Slurm on Google Cloud Platform

Slurm: A Highly Scalable Workload Manager

Examples for the Google Genomics Pipelines API.

Transcript assembly and quantification for RNA-Seq

RNA-seq analysis pipeline for detection of gene-fusions

Questions and answers about TOPmed, GTEx, and AGR resources.

A DSL for data-driven computational pipelines

Data-Centric Pipelines and Data Versioning