Deep Learning-based A Tool used to Drug Resistance Prediction of Mycobacterium tuberculosis Utilizing Whole Genome Mutations

CRyPTIC data processing pipelines

MAGMA pipeline (based on XBS-core and Nextflow)

nextflow pipeline for analyzing Mycobacterium bovis genomes

Comprehensive pipeline for detection of TB from ONT adaptive sequencing and amplicon data.

CNN models for antibiotic resistance prediction in M. tuberculosis genomes. From Green & Yoon et al (forthcoming)

A pipeline to remove contaminant NGS reads from TB-sputum samples