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@oicr-gsi

Genome Sequence Informatics

Repositories for OICR's Genome Sequence Informatics team

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  1. shesmu Public

    Decision-driven action launching system

    Java 8 4

  2. djerba Public

    Create cancer bioinformatics reports from metadata and workflow output

    Python 9 6

  3. vidarr Public

    Analysis provenance tracking server

    Java 1 1

  4. data_release Public

    Scripts for releasing data generated at OICR to stakeholders

    Python

Repositories

Showing 10 of 244 repositories
  • msisensor Public

    msisensor-pro workflow

    WDL 0 0 0 1 Updated Mar 27, 2025
  • star Public

    Workflow for STAR RNAseq aligner

    WDL 0 GPL-3.0 1 0 3 Updated Mar 27, 2025
  • shesmu Public

    Decision-driven action launching system

    Java 8 MIT 4 0 1 Updated Mar 27, 2025
  • fastqc Public

    Workflow for FastQC

    WDL 0 1 0 1 Updated Mar 27, 2025
  • gridss Public

    OICR WDL implementation of GRIDSS PURPLE LINX

    WDL 1 0 0 0 Updated Mar 27, 2025
  • hsMetrics Public

    Workflow to run HSMetrics

    WDL 0 0 0 0 Updated Mar 27, 2025
  • rsem Public

    WDL workflow for RSEM tool (transcription analysis for RNAseq)

    WDL 0 GPL-3.0 2 0 1 Updated Mar 27, 2025
  • tmbAnalysis Public

    A workflow to align fastq reads, call variants, annotate and assess TMB

    WDL 0 0 0 0 Updated Mar 27, 2025
  • umiCollapse Public

    umiCollapse workflow, generating umi deduplicated bam file and stats

    WDL 0 0 0 0 Updated Mar 27, 2025
  • umiConsensus Public

    Workflow to generate consensus sequence bases on UMIs using consensusCruncher.

    WDL 1 0 0 0 Updated Mar 27, 2025
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