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‎_viash.yaml

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viash_version: 0.9.3
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version: v2.1.0-rc.1
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version: v2.1.0
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source: src
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target: target

‎target/executable/annotate/celltypist/.config.vsh.yaml

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@@ -416,12 +416,12 @@ build_info:
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output: "target/executable/annotate/celltypist"
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executable: "target/executable/annotate/celltypist/celltypist"
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viash_version: "0.9.3"
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git_commit: "55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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git_commit: "f80e3d205424a1767687afba3d44764c72ff3d02"
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git_remote: "https://github.com/openpipelines-bio/openpipeline"
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git_tag: "2.1.0-rc.1-2-g55f86665377"
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git_tag: "2.1.0-rc.1-3-gf80e3d20542"
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package_config:
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name: "openpipeline"
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version: "v2.1.0-rc.1"
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version: "v2.1.0"
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info:
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test_resources:
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- type: "s3"

‎target/executable/annotate/celltypist/celltypist

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@@ -465,9 +465,9 @@ RUN pip install --upgrade pip && \
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LABEL org.opencontainers.image.authors="Jakub Majercik, Weiwei Schultz"
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LABEL org.opencontainers.image.description="Companion container for running component annotate celltypist"
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LABEL org.opencontainers.image.created="2025-04-11T11:34:16Z"
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LABEL org.opencontainers.image.created="2025-04-11T11:43:56Z"
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LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
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LABEL org.opencontainers.image.revision="55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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LABEL org.opencontainers.image.revision="f80e3d205424a1767687afba3d44764c72ff3d02"
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LABEL org.opencontainers.image.version="2.1.0"
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VIASHDOCKER

‎target/executable/annotate/onclass/.config.vsh.yaml

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@@ -387,12 +387,12 @@ build_info:
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output: "target/executable/annotate/onclass"
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executable: "target/executable/annotate/onclass/onclass"
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viash_version: "0.9.3"
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git_commit: "55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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git_commit: "f80e3d205424a1767687afba3d44764c72ff3d02"
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git_remote: "https://github.com/openpipelines-bio/openpipeline"
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git_tag: "2.1.0-rc.1-2-g55f86665377"
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git_tag: "2.1.0-rc.1-3-gf80e3d20542"
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package_config:
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name: "openpipeline"
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version: "v2.1.0-rc.1"
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version: "v2.1.0"
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info:
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test_resources:
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- type: "s3"

‎target/executable/annotate/onclass/onclass

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@@ -454,9 +454,9 @@ RUN pip install --upgrade pip && \
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LABEL org.opencontainers.image.authors="Jakub Majercik"
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LABEL org.opencontainers.image.description="Companion container for running component annotate onclass"
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LABEL org.opencontainers.image.created="2025-04-11T11:34:16Z"
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LABEL org.opencontainers.image.created="2025-04-11T11:43:56Z"
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LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
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LABEL org.opencontainers.image.revision="55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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LABEL org.opencontainers.image.revision="f80e3d205424a1767687afba3d44764c72ff3d02"
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LABEL org.opencontainers.image.version="2.1.0"
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VIASHDOCKER

‎target/executable/annotate/popv/.config.vsh.yaml

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@@ -353,12 +353,12 @@ build_info:
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output: "target/executable/annotate/popv"
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executable: "target/executable/annotate/popv/popv"
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viash_version: "0.9.3"
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git_commit: "55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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git_commit: "f80e3d205424a1767687afba3d44764c72ff3d02"
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git_remote: "https://github.com/openpipelines-bio/openpipeline"
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git_tag: "2.1.0-rc.1-2-g55f86665377"
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git_tag: "2.1.0-rc.1-3-gf80e3d20542"
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package_config:
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name: "openpipeline"
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version: "v2.1.0-rc.1"
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version: "v2.1.0"
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info:
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test_resources:
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- type: "s3"

‎target/executable/annotate/popv/popv

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@@ -466,9 +466,9 @@ RUN cd /opt && git clone --depth 1 https://github.com/YosefLab/PopV.git
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LABEL org.opencontainers.image.authors="Matthias Beyens, Robrecht Cannoodt"
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LABEL org.opencontainers.image.description="Companion container for running component annotate popv"
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LABEL org.opencontainers.image.created="2025-04-11T11:34:16Z"
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LABEL org.opencontainers.image.created="2025-04-11T11:43:56Z"
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LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
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LABEL org.opencontainers.image.revision="55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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LABEL org.opencontainers.image.revision="f80e3d205424a1767687afba3d44764c72ff3d02"
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LABEL org.opencontainers.image.version="2.1.0"
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VIASHDOCKER

‎target/executable/annotate/random_forest_annotation/.config.vsh.yaml

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@@ -402,12 +402,12 @@ build_info:
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output: "target/executable/annotate/random_forest_annotation"
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executable: "target/executable/annotate/random_forest_annotation/random_forest_annotation"
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viash_version: "0.9.3"
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git_commit: "55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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git_commit: "f80e3d205424a1767687afba3d44764c72ff3d02"
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git_remote: "https://github.com/openpipelines-bio/openpipeline"
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git_tag: "2.1.0-rc.1-2-g55f86665377"
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git_tag: "2.1.0-rc.1-3-gf80e3d20542"
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package_config:
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name: "openpipeline"
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version: "v2.1.0-rc.1"
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version: "v2.1.0"
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info:
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test_resources:
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- type: "s3"

‎target/executable/annotate/random_forest_annotation/random_forest_annotation

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@@ -461,9 +461,9 @@ RUN pip install --upgrade pip && \
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LABEL org.opencontainers.image.authors="Jakub Majercik"
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LABEL org.opencontainers.image.description="Companion container for running component annotate random_forest_annotation"
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LABEL org.opencontainers.image.created="2025-04-11T11:34:15Z"
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LABEL org.opencontainers.image.created="2025-04-11T11:43:55Z"
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LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
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LABEL org.opencontainers.image.revision="55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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LABEL org.opencontainers.image.revision="f80e3d205424a1767687afba3d44764c72ff3d02"
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LABEL org.opencontainers.image.version="2.1.0"
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VIASHDOCKER

‎target/executable/annotate/scanvi/.config.vsh.yaml

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@@ -424,12 +424,12 @@ build_info:
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output: "target/executable/annotate/scanvi"
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executable: "target/executable/annotate/scanvi/scanvi"
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viash_version: "0.9.3"
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git_commit: "55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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git_commit: "f80e3d205424a1767687afba3d44764c72ff3d02"
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git_remote: "https://github.com/openpipelines-bio/openpipeline"
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git_tag: "2.1.0-rc.1-2-g55f86665377"
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git_tag: "2.1.0-rc.1-3-gf80e3d20542"
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package_config:
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name: "openpipeline"
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version: "v2.1.0-rc.1"
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version: "v2.1.0"
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info:
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test_resources:
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- type: "s3"

‎target/executable/annotate/scanvi/scanvi

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@@ -459,9 +459,9 @@ RUN pip install --upgrade pip && \
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LABEL org.opencontainers.image.authors="Dorien Roosen, Jakub Majercik, Weiwei Schultz"
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LABEL org.opencontainers.image.description="Companion container for running component annotate scanvi"
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LABEL org.opencontainers.image.created="2025-04-11T11:34:16Z"
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LABEL org.opencontainers.image.created="2025-04-11T11:43:56Z"
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LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
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LABEL org.opencontainers.image.revision="55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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LABEL org.opencontainers.image.revision="f80e3d205424a1767687afba3d44764c72ff3d02"
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LABEL org.opencontainers.image.version="2.1.0"
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VIASHDOCKER

‎target/executable/annotate/svm_annotation/.config.vsh.yaml

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@@ -384,12 +384,12 @@ build_info:
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output: "target/executable/annotate/svm_annotation"
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executable: "target/executable/annotate/svm_annotation/svm_annotation"
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viash_version: "0.9.3"
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git_commit: "55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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git_commit: "f80e3d205424a1767687afba3d44764c72ff3d02"
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git_remote: "https://github.com/openpipelines-bio/openpipeline"
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git_tag: "2.1.0-rc.1-2-g55f86665377"
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git_tag: "2.1.0-rc.1-3-gf80e3d20542"
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package_config:
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name: "openpipeline"
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version: "v2.1.0-rc.1"
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version: "v2.1.0"
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info:
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test_resources:
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- type: "s3"

‎target/executable/annotate/svm_annotation/svm_annotation

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@@ -461,9 +461,9 @@ RUN pip install --upgrade pip && \
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LABEL org.opencontainers.image.authors="Jakub Majercik"
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LABEL org.opencontainers.image.description="Companion container for running component annotate svm_annotation"
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LABEL org.opencontainers.image.created="2025-04-11T11:34:17Z"
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LABEL org.opencontainers.image.created="2025-04-11T11:43:57Z"
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LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
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LABEL org.opencontainers.image.revision="55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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LABEL org.opencontainers.image.revision="f80e3d205424a1767687afba3d44764c72ff3d02"
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LABEL org.opencontainers.image.version="2.1.0"
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VIASHDOCKER

‎target/executable/cluster/leiden/.config.vsh.yaml

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output: "target/executable/cluster/leiden"
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executable: "target/executable/cluster/leiden/leiden"
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viash_version: "0.9.3"
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git_commit: "55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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git_commit: "f80e3d205424a1767687afba3d44764c72ff3d02"
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git_remote: "https://github.com/openpipelines-bio/openpipeline"
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git_tag: "2.1.0-rc.1-2-g55f86665377"
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git_tag: "2.1.0-rc.1-3-gf80e3d20542"
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package_config:
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name: "openpipeline"
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version: "v2.1.0-rc.1"
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version: "v2.1.0"
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info:
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test_resources:
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- type: "s3"

‎target/executable/cluster/leiden/leiden

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LABEL org.opencontainers.image.authors="Dries De Maeyer"
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LABEL org.opencontainers.image.description="Companion container for running component cluster leiden"
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LABEL org.opencontainers.image.created="2025-04-11T11:34:14Z"
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LABEL org.opencontainers.image.created="2025-04-11T11:43:54Z"
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LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
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LABEL org.opencontainers.image.revision="55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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LABEL org.opencontainers.image.revision="f80e3d205424a1767687afba3d44764c72ff3d02"
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LABEL org.opencontainers.image.version="2.1.0"
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VIASHDOCKER

‎target/executable/compression/compress_h5mu/.config.vsh.yaml

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output: "target/executable/compression/compress_h5mu"
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executable: "target/executable/compression/compress_h5mu/compress_h5mu"
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viash_version: "0.9.3"
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git_commit: "55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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git_commit: "f80e3d205424a1767687afba3d44764c72ff3d02"
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git_remote: "https://github.com/openpipelines-bio/openpipeline"
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git_tag: "2.1.0-rc.1-2-g55f86665377"
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git_tag: "2.1.0-rc.1-3-gf80e3d20542"
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package_config:
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name: "openpipeline"
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version: "v2.1.0-rc.1"
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version: "v2.1.0"
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info:
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test_resources:
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- type: "s3"

‎target/executable/compression/compress_h5mu/compress_h5mu

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LABEL org.opencontainers.image.authors="Dries Schaumont"
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LABEL org.opencontainers.image.description="Companion container for running component compression compress_h5mu"
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LABEL org.opencontainers.image.created="2025-04-11T11:34:12Z"
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LABEL org.opencontainers.image.created="2025-04-11T11:43:52Z"
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LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
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LABEL org.opencontainers.image.revision="55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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LABEL org.opencontainers.image.revision="f80e3d205424a1767687afba3d44764c72ff3d02"
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LABEL org.opencontainers.image.version="2.1.0"
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VIASHDOCKER

‎target/executable/compression/tar_extract/.config.vsh.yaml

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output: "target/executable/compression/tar_extract"
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viash_version: "0.9.3"
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git_commit: "55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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git_commit: "f80e3d205424a1767687afba3d44764c72ff3d02"
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git_remote: "https://github.com/openpipelines-bio/openpipeline"
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git_tag: "2.1.0-rc.1-2-g55f86665377"
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git_tag: "2.1.0-rc.1-3-gf80e3d20542"
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package_config:
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name: "openpipeline"
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version: "v2.1.0-rc.1"
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version: "v2.1.0"
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info:
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test_resources:
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- type: "s3"

‎target/executable/compression/tar_extract/tar_extract

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@@ -446,9 +446,9 @@ function ViashDockerfile {
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FROM ubuntu:latest
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ENTRYPOINT []
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LABEL org.opencontainers.image.description="Companion container for running component compression tar_extract"
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LABEL org.opencontainers.image.created="2025-04-11T11:34:11Z"
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LABEL org.opencontainers.image.created="2025-04-11T11:43:51Z"
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LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
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LABEL org.opencontainers.image.revision="55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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LABEL org.opencontainers.image.revision="f80e3d205424a1767687afba3d44764c72ff3d02"
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LABEL org.opencontainers.image.version="2.1.0"
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VIASHDOCKER

‎target/executable/convert/from_10xh5_to_h5mu/.config.vsh.yaml

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@@ -297,12 +297,12 @@ build_info:
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output: "target/executable/convert/from_10xh5_to_h5mu"
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viash_version: "0.9.3"
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git_commit: "55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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git_commit: "f80e3d205424a1767687afba3d44764c72ff3d02"
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git_remote: "https://github.com/openpipelines-bio/openpipeline"
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git_tag: "2.1.0-rc.1-2-g55f86665377"
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git_tag: "2.1.0-rc.1-3-gf80e3d20542"
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package_config:
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name: "openpipeline"
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version: "v2.1.0-rc.1"
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version: "v2.1.0"
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info:
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test_resources:
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- type: "s3"

‎target/executable/convert/from_10xh5_to_h5mu/from_10xh5_to_h5mu

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@@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \
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LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
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LABEL org.opencontainers.image.description="Companion container for running component convert from_10xh5_to_h5mu"
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LABEL org.opencontainers.image.created="2025-04-11T11:34:12Z"
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LABEL org.opencontainers.image.created="2025-04-11T11:43:52Z"
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LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
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LABEL org.opencontainers.image.revision="55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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LABEL org.opencontainers.image.revision="f80e3d205424a1767687afba3d44764c72ff3d02"
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LABEL org.opencontainers.image.version="2.1.0"
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VIASHDOCKER

‎target/executable/convert/from_10xmtx_to_h5mu/.config.vsh.yaml

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@@ -198,12 +198,12 @@ build_info:
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output: "target/executable/convert/from_10xmtx_to_h5mu"
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executable: "target/executable/convert/from_10xmtx_to_h5mu/from_10xmtx_to_h5mu"
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viash_version: "0.9.3"
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git_commit: "55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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git_commit: "f80e3d205424a1767687afba3d44764c72ff3d02"
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git_remote: "https://github.com/openpipelines-bio/openpipeline"
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git_tag: "2.1.0-rc.1-2-g55f86665377"
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git_tag: "2.1.0-rc.1-3-gf80e3d20542"
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package_config:
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name: "openpipeline"
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version: "v2.1.0-rc.1"
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version: "v2.1.0"
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info:
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test_resources:
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- type: "s3"

‎target/executable/convert/from_10xmtx_to_h5mu/from_10xmtx_to_h5mu

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@@ -458,9 +458,9 @@ RUN pip install --upgrade pip && \
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LABEL org.opencontainers.image.authors="Robrecht Cannoodt"
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LABEL org.opencontainers.image.description="Companion container for running component convert from_10xmtx_to_h5mu"
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LABEL org.opencontainers.image.created="2025-04-11T11:34:12Z"
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LABEL org.opencontainers.image.created="2025-04-11T11:43:52Z"
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LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
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LABEL org.opencontainers.image.revision="55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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LABEL org.opencontainers.image.revision="f80e3d205424a1767687afba3d44764c72ff3d02"
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LABEL org.opencontainers.image.version="2.1.0"
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‎target/executable/convert/from_bd_to_10x_molecular_barcode_tags/.config.vsh.yaml

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output: "target/executable/convert/from_bd_to_10x_molecular_barcode_tags"
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executable: "target/executable/convert/from_bd_to_10x_molecular_barcode_tags/from_bd_to_10x_molecular_barcode_tags"
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viash_version: "0.9.3"
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git_commit: "55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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git_commit: "f80e3d205424a1767687afba3d44764c72ff3d02"
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git_remote: "https://github.com/openpipelines-bio/openpipeline"
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git_tag: "2.1.0-rc.1-2-g55f86665377"
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git_tag: "2.1.0-rc.1-3-gf80e3d20542"
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package_config:
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name: "openpipeline"
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version: "v2.1.0-rc.1"
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version: "v2.1.0"
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info:
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test_resources:
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- type: "s3"

‎target/executable/convert/from_bd_to_10x_molecular_barcode_tags/from_bd_to_10x_molecular_barcode_tags

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LABEL org.opencontainers.image.authors="Dries Schaumont"
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LABEL org.opencontainers.image.description="Companion container for running component convert from_bd_to_10x_molecular_barcode_tags"
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LABEL org.opencontainers.image.created="2025-04-11T11:34:11Z"
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LABEL org.opencontainers.image.created="2025-04-11T11:43:51Z"
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LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
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LABEL org.opencontainers.image.revision="55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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LABEL org.opencontainers.image.revision="f80e3d205424a1767687afba3d44764c72ff3d02"
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LABEL org.opencontainers.image.version="2.1.0"
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VIASHDOCKER

‎target/executable/convert/from_bdrhap_to_h5mu/.config.vsh.yaml

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output: "target/executable/convert/from_bdrhap_to_h5mu"
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executable: "target/executable/convert/from_bdrhap_to_h5mu/from_bdrhap_to_h5mu"
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viash_version: "0.9.3"
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git_commit: "55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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git_commit: "f80e3d205424a1767687afba3d44764c72ff3d02"
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git_remote: "https://github.com/openpipelines-bio/openpipeline"
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git_tag: "2.1.0-rc.1-2-g55f86665377"
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git_tag: "2.1.0-rc.1-3-gf80e3d20542"
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package_config:
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name: "openpipeline"
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version: "v2.1.0-rc.1"
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version: "v2.1.0"
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info:
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test_resources:
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- type: "s3"

‎target/executable/convert/from_bdrhap_to_h5mu/from_bdrhap_to_h5mu

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@@ -459,9 +459,9 @@ RUN pip install --upgrade pip && \
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LABEL org.opencontainers.image.authors="Dorien Roosen, Robrecht Cannoodt"
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LABEL org.opencontainers.image.description="Companion container for running component convert from_bdrhap_to_h5mu"
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LABEL org.opencontainers.image.created="2025-04-11T11:34:11Z"
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LABEL org.opencontainers.image.created="2025-04-11T11:43:51Z"
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LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
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LABEL org.opencontainers.image.revision="55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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LABEL org.opencontainers.image.revision="f80e3d205424a1767687afba3d44764c72ff3d02"
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LABEL org.opencontainers.image.version="2.1.0"
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‎target/executable/convert/from_cellranger_multi_to_h5mu/.config.vsh.yaml

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@@ -227,12 +227,12 @@ build_info:
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output: "target/executable/convert/from_cellranger_multi_to_h5mu"
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executable: "target/executable/convert/from_cellranger_multi_to_h5mu/from_cellranger_multi_to_h5mu"
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viash_version: "0.9.3"
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git_commit: "55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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git_commit: "f80e3d205424a1767687afba3d44764c72ff3d02"
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git_remote: "https://github.com/openpipelines-bio/openpipeline"
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git_tag: "2.1.0-rc.1-2-g55f86665377"
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git_tag: "2.1.0-rc.1-3-gf80e3d20542"
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package_config:
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name: "openpipeline"
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version: "v2.1.0-rc.1"
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version: "v2.1.0"
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info:
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test_resources:
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- type: "s3"

‎target/executable/convert/from_cellranger_multi_to_h5mu/from_cellranger_multi_to_h5mu

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LABEL org.opencontainers.image.authors="Dries Schaumont"
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LABEL org.opencontainers.image.description="Companion container for running component convert from_cellranger_multi_to_h5mu"
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LABEL org.opencontainers.image.created="2025-04-11T11:34:12Z"
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LABEL org.opencontainers.image.created="2025-04-11T11:43:52Z"
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LABEL org.opencontainers.image.source="https://github.com/openpipelines-bio/openpipeline"
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LABEL org.opencontainers.image.revision="55f86665377e4cab2bb472e5dba68ae9d6c68d21"
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LABEL org.opencontainers.image.revision="f80e3d205424a1767687afba3d44764c72ff3d02"
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LABEL org.opencontainers.image.version="2.1.0"
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VIASHDOCKER

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