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Open Problems in Single-Cell Analysis

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https://openproblems.bio

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openproblems openproblems Public

Formalizing and benchmarking open problems in single-cell genomics

Python 362 83
website website Public

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TeX 4 8

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Showing 10 of 36 repositories

task_cyto_batch_integration Public

openproblems-bio/task_cyto_batch_integration’s past year of commit activity

Python 1 MIT 1 9 (1 issue needs help) 2 Updated Jul 8, 2025
task_batch_integration Public

openproblems-bio/task_batch_integration’s past year of commit activity

Python 8 MIT 9 6 10 Updated Jul 8, 2025
task_grn_inference Public

openproblems-bio/task_grn_inference’s past year of commit activity

Python 8 MIT 3 2 (1 issue needs help) 0 Updated Jul 7, 2025
task_ist_preprocessing Public

openproblems-bio/task_ist_preprocessing’s past year of commit activity

Python 6 MIT 3 5 5 Updated Jul 5, 2025
task_perturbation_prediction Public
A benchmark on predicting how small molecules change gene expression in different cell types.

openproblems-bio/task_perturbation_prediction’s past year of commit activity

Python 11 MIT 3 5 4 Updated Jul 4, 2025
openproblems Public
Formalizing and benchmarking open problems in single-cell genomics

openproblems-bio/openproblems’s past year of commit activity

Python 362 MIT 83 12 (1 issue needs help) 1 Updated Jul 4, 2025
nbt2025-manuscript Public

openproblems-bio/nbt2025-manuscript’s past year of commit activity

R 1 0 0 0 Updated Jun 26, 2025
datasets Public

openproblems-bio/datasets’s past year of commit activity

Shell 0 MIT 0 0 0 Updated Jun 20, 2025
docs Public

openproblems-bio/docs’s past year of commit activity

TeX 1 0 8 1 Updated Jun 18, 2025
task_denoising Public
Removing noise in sparse single-cell RNA-sequencing count data

openproblems-bio/task_denoising’s past year of commit activity

Python 1 MIT 2 2 0 Updated Jun 11, 2025

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