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sgkit-dev

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  1. sgkit sgkit Public

    Scalable genetics toolkit

    Python 252 33

  2. bio2zarr bio2zarr Public

    Convert bioinformatics file formats to Zarr

    Python 31 8

  3. vcf-zarr-spec vcf-zarr-spec Public

    VCF Zarr Specification

    12 2

  4. vcztools vcztools Public

    Partial reimplementation of bcftools for VCF Zarr

    Python 12 5

  5. sgkit-requirements sgkit-requirements Public

    Repo for collecting requirements.

    Jupyter Notebook 6 1

  6. sgkit-publication sgkit-publication Public

    Sgkit publication repository

    TeX 5 5

Repositories

Showing 10 of 15 repositories
  • bio2zarr Public

    Convert bioinformatics file formats to Zarr

    Python 31 Apache-2.0 8 35 (4 issues need help) 2 Updated Mar 20, 2025
  • vcf-zarr-spec Public

    VCF Zarr Specification

    12 Apache-2.0 2 16 0 Updated Mar 18, 2025
  • vcztools Public

    Partial reimplementation of bcftools for VCF Zarr

    Python 12 Apache-2.0 5 22 1 Updated Mar 14, 2025
  • SAIGE-VCZ Public Forked from saigegit/SAIGE

    SAIGE extension that supports VCF Zarr

    C++ 0 GPL-3.0 27 0 0 Updated Mar 6, 2025
  • vcf-zarr-publication Public

    Manuscript and associated scripts for vcf-zarr publication

    Jupyter Notebook 2 11 3 0 Updated Mar 5, 2025
  • sgkit Public

    Scalable genetics toolkit

    Python 252 Apache-2.0 33 217 (2 issues need help) 9 Updated Feb 11, 2025
  • sgkit-benchmarks-asv Public
    JavaScript 0 1 0 0 Updated Feb 11, 2025
  • hypothesis-vcf Public

    Hypothesis strategy for generating VCF

    Python 1 Apache-2.0 0 0 0 Updated Jan 29, 2025
  • sgkit-publication Public

    Sgkit publication repository

    TeX 5 5 19 0 Updated Mar 6, 2024
  • sgkit-publication-backup Public Forked from sgkit-dev/sgkit-publication

    Backup of sgkit publication repository, original manubot version

    HTML 0 5 0 0 Updated Feb 27, 2023
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