issues Search Results · repo:viash-io/viash language:Scala
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inviash-io/viash (press backspace or delete to remove)Feature summary
WIP: I m thinking (again) about how to restructure the commands
Global commands:
- viash check: Check whether Viash is installed properly and whether optional dependencies such as ...
enhancement
rcannood
- Opened 2 days ago
- #830
Feature summary
Add support for the Viash component spec in Linguist
Feature description
See https://github.com/github-linguist/linguist/blob/main/CONTRIBUTING.md#adding-a-language
Why is this feature ...
enhancement
- Opened 16 days ago
- #829
The fix in #824 was added to develop_0_9 and develop_0_8 but not to develop yet
- Opened 24 days ago
- #828
What happened?
When using java 17 (which is the recommended java version on the website), the biobox repo (commit
1efc0264ca674d8cff7729fcd0ad8f11ea06ee27 on main at the time of writing) fails to parse. ...
bug
DriesSchaumont
- Opened on Apr 29
- #827
Feature summary
Group changelogs into minor versions, ie. CHANGELOG_0.10.md, CHANGELOG_0.9.md, .... Alternatively, changelog/0.10.md,
changelog/0.9.md, ...
Feature description
.
Why is this feature ...
enhancement
Grifs
- Opened on Apr 24
- #825
Feature summary
The test resources that need to be synced are currently defined via:
info:
test_resources:
- type: s3
path: s3://openpipelines-data
dest: resources_test
Rather than ...
enhancement
- Opened on Apr 4
- #822
What happened?
When using \ as input for an argument of type string, the nextflow runner fails to properly escape the input.
Steps to reproduce
mkdir -p /tmp/test_bug
cd /tmp/test_bug
cat _viash.yaml ...
bug
- Opened on Apr 1
- #821
https://github.com/viash-io/viash/blob/3866fc9df2254fb77bb0e66f1af2e2eff76f2b8b/src/main/scala/io/viash/runners/NextflowRunner.scala#L178
Would be great if we could fill in the full path of the workflow, ...
enhancement
- 1
- Opened on Mar 18
- #810
Wishlist for new Nextflow functionality
Relevant info:
- https://www.nextflow.io/docs/latest/workflow.html#publishing-outputs
- Opened on Mar 17
- #809
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