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Pinned repositories
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rust-bio
Forked from rust-bio/rust-bioThis library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
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rust-htslib
Forked from rust-bio/rust-htslibThis library provides HTSlib bindings and a high level Rust API for reading and writing BAM files.
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rust-pseudoaligner
Single-Cell RNA-seq pseudo-aligner
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vartrix
Single-Cell Genotyping Tool
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rust-debruijn
De Bruijn graphs in Rust
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rust-shardio
Out-of-memory sorting of large datasets map / reduce style processing
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rust-toolbox
Rust utility code
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scHLAcount
Count HLA alleles in single-cell RNA-seq data
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orbit
Rust wrapper for STAR aligner
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rust-boomphf
Fast and scalable minimal perfect hashing for massive key sets
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rust-bwa
Rust wrapper of the BWA C API
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cellranger-dna
Single Cell DNA Copy Number Profiling
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bamtofastq
Convert 10x BAM files to the original FASTQs compatible with 10x pipelines
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lariat
Linked-Read Alignment Tool
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chromium-genome-paper
Analysis code from "Resolving the Full Spectrum of Human Genome Variation using Linked-Reads"
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cellranger
10x Genomics Single Cell 3' Gene Expression and VDJ Assembly
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supernova
10x Genomics Linked-Read Diploid De Novo Assembler
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longranger
10x Genomics Linked-Read Alignment, Variant Calling, Phasing, and Structural Variant Calling
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pyBigWig
Forked from deeptools/pyBigWigA python extension for quick access to bigWig and bigBed files
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