For details and latest version see https://stattarget.github.io/docs/
Package vignettes: Vignettes
Reference manual: Manual
Demo data: Data
Example reports: Reports
Binary Package: statTarget2_WindowsOnly.zip
Please cite the following article when using statTarget or QC-RFSC algorithm:
Luan H., Ji F., Chen Y., Cai Z. (2018) statTarget: A streamlined tool for signal drift correction and interpretations of quantitative mass spectrometry-based omics data. Analytica Chimica Acta. dio: https://doi.org/10.1016/j.aca.2018.08.002
Luan H., Ji F., Chen Y., Cai Z. (2018) Quality control-based signal drift correction and interpretations of metabolomics/proteomics data using random forest regression. bioRxiv 253583; doi: https://doi.org/10.1101/253583
Dependent on R (>= 3.3.0)
If you did not install the R software yet,you can download R >= 3.3.0 from https://www.r-project.org
Install “statTarget2” at the Bioconductor
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("statTarget", version = "3.9") library(statTarget) statTargetGUI()
Install the version of "statTarget2" at Github. copy this code into R
library(devtools) devtools::install_github("statTarget/statTarget2") library(statTarget) statTargetGUI()
IMPORTANCE: for mac PC, XQuartz instead of X11 support should be installed for the Graphical User Interface (GUI). Download it from https://www.xquartz.org.
RGTK2 is a binding for R to the GTK2 library and dependent libraries, and a multi-platform package for creating graphical user interfaces. If you have any problems about RGTK2 installation, see the related installation information for R and GTK on Windows/Mac OS at https://gist.github.com/sebkopf/9405675.
We recommend the R 3.3.0 and RGtk2 2.20.31 for mac OS paltform.
The R 3.3.0 and RGtk2 2.20.31 sailed through the test.If you have multiple versions of R framework installed, RSwitch - a small GUI that allows you to switch between R versions quickly. Download it from https://r.research.att.com