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An R package providing tools to visualize movement data (e.g. from GPS tracking) and temporal changes of environmental data (e.g. from remote sensing) by creating video animations.
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README.md

moveVis

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Introduction

moveVis provides tools to visualize movement data (e.g. from GPS tracking) and temporal changes of environmental data (e.g. from remote sensing) by creating video animations. It works with move, sp and raster class inputs and turns them into ggplot2 frames that can be further customized. moveVis uses gifski (wraping the gifski cargo crate) and av (binding to FFmpeg) to render frames into animated GIF or video files.


Figure 1: Example movement tracks nearby Lake of Constance on top of a OSM watercolor and a mapbox satellite base map



Figure 2: Example movement tracks nearby Lake of Constance and a gradient base layer faded over time

Installation

With version 0.10.0, the package has been rewritten from the ground up with the goal to make it easier to customize the appearance of movement animations. Thus, the logic of the package, its functions and their syntax have changed.

moveVis 0.10.0 (stable) can be installed from CRAN:

install.packages("moveVis")

The development version can be installed from GitHub:

devtools::install_github("16EAGLE/moveVis")

Code written for moveVis version <=0.9.9 will not work with newer versions, but it is quite simple and thus highly recommended to switch to the new syntax due to a variety of advantages. moveVis version <=0.9.9 can still be downloaded here and installed manually:

setwd("your/download/directory")
install.packages("moveVis-0.9.9.tar.gz", repos = NULL)

Function overview

moveVis includes the following functions, sorted by the order they would be applied to create an animation from movement and environmental data:

Preparing movement tracks

  • df2move() converts a data.frame into a move or moveStack object. This is useful if you do not usually work with the move classes and your tracks are present as data.frames.
  • align_move() aligns single and multi-individual movement data to a uniform time scale with a uniform temporal resolution needed for creating an animation from it. Use this function to prepare your movement data for animation depending on the temporal resolution that suits your data.
  • subset_move() subsets a move or moveStack by a given time span. This is useful if you want to create a movement animation of only a temporal subset of your data, e.g. a particular day.

Creating frames

  • get_maptypes() returns a character vector of available map types that can be used with frames_spatial(). moveVis supports OpenStreetMaps and Mapbox basemap imergay. Alternatively, you can provide custom imagery to frames_spatial().
  • frames_spatial() creates a list of ggplot2 maps displaying movement. Each object represents a single frame. Each frame can be viewed or modified individually. The returned list of frames can be animated using animate_frames().
  • frames_graph() creates a list of ggplot2 graphs displaying movement-environment interaction. Each object represents a single frame. Each frame can be viewed or modified individually. The returned list of frames can be animated using animate_frames().

Adapting frames

  • add_gg() adds ggplot2 functions (e.g. to add layers such as points, polygons, lines, or to change scales etc.) to the animation frames created with frames_spatial() or frames_graph(). Instead of creating your own ggplot2 functions, you can use one of the other moveVis `add_``functions:
  • add_labels() adds character labels such as title or axis labels to animation frames created with frames_spatial() or frames_graph().
  • add_scalebar() adds a scalebar to the animation frames created with frames_spatial() or frames_graph().
  • add_northarrow() adds a north arrow to the animation frames created with frames_spatial() or frames_graph().
  • add_progress() adds a progress bar to animation frames created with frames_spatial() or frames_graph().
  • add_timestamps() adds timestamps to animation frames created with frames_spatial() or frames_graph().
  • add_text() adds static or dynamically changing text to the animation frames created with frames_spatial() or frames_graph().
  • add_colourscale() adjusts the colour scales of the animation frames created with frames_spatial() and custom map imagery using the r_list argument.
  • join_frames() side-by-side joins the ggplot2 objects of two or more frames lists of equal lengths into a single list of ggplot2 objects per frame using cowplot::plot_grid. This is useful if you want to side-by-side combine spatial frames returned by frames_spatial() with graph frames returned by frames_graph().

Animating frames (as GIF or video)

  • suggest_formats() returns a selection of suggested file formats that can be used with out_file of animate_frames() on your system.
  • animate_frames() creates an animation from a list of frames computed with frames_spatial(), frames_graph() or join_frames().

Viewing movement tracks

  • view_spatial() displays movement tracks on an interactive mapview or leaflet map.

Get started

The following example shows how to make a simple animation using a default base map by first aligning your movement data to a uniform time scale, creating a list of ggplot2 frames and turning these frames into an animated GIF:

library(moveVis)
library(move)
data("move_data") # move class object
# if your tracks are present as data.frames, see df2move() for conversion

# align move_data to a uniform time scale
move_data <- align_move(move_data, res = 240, digit = 0, unit = "secs")

# create spatial frames with a OpenStreetMap watercolour map
frames <- frames_spatial(move_data, path_colours = c("red", "green", "blue"),
                         map_service = "osm", map_type = "watercolor", alpha = 0.5)
frames[[100]] # preview one of the frames

# animate frames
animate_frames(frames, out_file = "/full/path/to/example_1.gif")

Examples

You can find detailed code examples on how to use moveVis here:

Example 1: Creating a simple movement animation

Example 2: Customizing frames

Example 3: Using a mapbox satellite base map

Example 4: Custom base maps from raster data (to be added soon)

Example 5: Interaction graphs (to be added soon)

Example 6: Joining frames side by side (to be added soon)

Example 7: View movement tracks

Code snippets

These commented moveVis code snippets, addressing specific issues or questions, could also be helpful to you:

How to adapt the path legend of frames created with frames_spatial()

How to create a data.frame containing each track coordinate per frame

How to overlay frames with additional transparent rasters changing over time

Features to be added

Things and features that should be added in future versions of moveVis (feel free to contribute to this list using a pull request):

Next version:

  • "keep tracks" setting to force paths to not disappear
  • follow population mode
  • follow individual mode
  • day-/night-time visualization

Some day:

  • 3D animations, e.g. for including altitude data

Related packages

The Department of Remote Sensing of the University of Würzburg has developed other R packages that might interest you:

  • getSpatialData, a package to query, preview and download satellite data,
  • RStoolbox, a package providing a wide range of tools for every-day remote sensing processing needs,
  • rsMove, a package providing tools to query and analyze movement data using remote sensing.

For other news on the work at at the Department of Remote Sensing of the University of Würzburg, click here.

Acknowledgements

This initiative is part of the Opt4Environment project and was funded by the German Aerospace Center (DLR) on behalf of the Federal Ministry for Economic Affairs and Energy (BMWi) with the research grant 50 EE 1403.

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