`python pip install --user numpy scipy matplotlib ipython jupyter pandas sympy nose sudo apt-get install libjpeg-dev libfreetype6 libfreetype6-dev zlib1g-dev sudo apt-get install python-vtk python-setuptools python-numpy sudo pip install Pillow`
The Morphological Snakes are a family of related methods for image-guided evolution of curves and surfaces represented as a level-set of an embedding function. They have application in several computer vision areas, such as tracking and image segmentation.
The first ideas of Morphological Snakes were introduced in1.2 completes that work describing the underlying mathematical foundations, extending the application to the two-dimensional and three-dimensional cases, and introducing two new algorithms: Morphological Geodesic Active Contours and Morphological Active Contours Without Edges.
The contour evolution methods have been known in the Computer Vision community for years, perhaps being the Geodesic Active Contours and the Active Contours without edges the two most prominent examples. They both try to find a contour that serves as a boundary to separate the image in two areas (usually called foreground and background) based on the contents of the image. Both methods work by solving partial differential equations (PDEs) on an embedding function that has the contour as its zero-levelset.
The morphological snakes aim to provide a very fast, simple and stable approximation to the solution of these PDEs. They do so substituting the terms of the PDE by the repeated application of morphological operators over a binary embedding function.
The morphological operators are defined as translation and contrast-invariant operators. A morphological operator transforms an input function depending only on the shape of its levelsets. For example, two very well known morphological operators are the dilation and the erosion.
The PDE for the Geodesic Active Contours (GAC) is
This PDE is the sum of three terms. From left to right, the smoothing term, the balloon term and the image attachment term. It is well-known that the balloon term can be solved by the repeated application of a dilation (or erosion) operator with a small radius. Similarly, it is easy to simulate the image attachment term with simple binary rules. However, it is not so easy for the smoothing term.
3 introduces a new morphological operator, the curvature operator, and proves that it is a very good approximation to the mean curvature flow given by the smoothing term. With this new operator,4 also introduces the Morphological Geodesic Active Contours (MorphGAC).
The MorphGAC consists of the approximation to the above PDE of the GAC with the composition of the dilation, the erosion and the curvature operator.
In a very similar way, the Active Contours without Edges (ACWE) evolves the embedding function using the PDE
5 describes the Morphological ACWE (MorphACWE) approximating this PDE with the dilation, the erosion and the curvature operator.
The images below show some working examples of the Morphological Snakes.
The code provided is a Python implementation of the Morphological Snakes methods. It does not aim to be a fast or efficient implementation. Instead, it is intended to be as brief, understandable and self-contained as possible.
The code is documented and in tests.py there are some usage examples.
Morphological Snakes. Luis Álvarez, Luis Baumela, Pablo Márquez-Neila. In Proceedings of the IEEE Conference on Computer Vision and Pattern Recognition 2010 (CVPR10).↩
A morphological approach to curvature-based evolution of curves and surfaces. Pablo Márquez-Neila, Luis Baumela, Luis Álvarez. In IEEE Transactions on Pattern Analysis and Machine Intelligence (PAMI).↩
A morphological approach to curvature-based evolution of curves and surfaces. Pablo Márquez-Neila, Luis Baumela, Luis Álvarez. In IEEE Transactions on Pattern Analysis and Machine Intelligence (PAMI).↩
A morphological approach to curvature-based evolution of curves and surfaces. Pablo Márquez-Neila, Luis Baumela, Luis Álvarez. In IEEE Transactions on Pattern Analysis and Machine Intelligence (PAMI).↩
A morphological approach to curvature-based evolution of curves and surfaces. Pablo Márquez-Neila, Luis Baumela, Luis Álvarez. In IEEE Transactions on Pattern Analysis and Machine Intelligence (PAMI).↩