From 7cd0ab94e00395446af3ac18898e70c6647fe3a9 Mon Sep 17 00:00:00 2001 From: Sarah Date: Wed, 30 May 2018 14:37:32 -0400 Subject: [PATCH 1/4] Changed name of TreatmentGeneric sheet to TreatmentAgentbased --- wranglertools/get_field_info.py | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/wranglertools/get_field_info.py b/wranglertools/get_field_info.py index 3230639c..c87b2d59 100755 --- a/wranglertools/get_field_info.py +++ b/wranglertools/get_field_info.py @@ -118,10 +118,11 @@ class FieldInfo(object): sheet_order = [ "User", "Award", "Lab", "Document", "Protocol", "Publication", "Organism", - "IndividualMouse", "IndividualHuman", "Vendor", "Enzyme", "Construct", "TreatmentRnai", - "TreatmentChemical", "GenomicRegion", "Target", "Antibody", "Modification", "Image", - "Biosource", "BiosampleCellCulture", "Biosample", "FileFastq", - "FileProcessed", "FileReference", "FileCalibration", "FileSet", "FileSetCalibration", + "IndividualMouse", "IndividualHuman", "Vendor", "Enzyme", "Construct", + "TreatmentRnai", "TreatmentChemical", "TreatmentAgentbased", "GenomicRegion", + "Target", "Antibody", "Modification", "Image", "Biosource", + "BiosampleCellCulture", "Biosample", "FileFastq", "FileProcessed", + "FileReference", "FileCalibration", "FileSet", "FileSetCalibration", "MicroscopeSettingD1", "MicroscopeSettingD2", "MicroscopeSettingA1", "MicroscopeSettingA2", "FileMicroscopy", "FileSetMicroscopeQc", "ImagingPath", "ExperimentMic", "ExperimentMic_Path", "ExperimentHiC", "ExperimentCaptureC", "ExperimentRepliseq", "ExperimentAtacseq", From 037e5486ee7cf7da865e8091e8e9ca5f5794182b Mon Sep 17 00:00:00 2001 From: Sarah Date: Wed, 30 May 2018 16:21:02 -0400 Subject: [PATCH 2/4] Changed name of TreatmentAgentbased sheet to TreatmentAgent --- wranglertools/get_field_info.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/wranglertools/get_field_info.py b/wranglertools/get_field_info.py index c87b2d59..60e92734 100755 --- a/wranglertools/get_field_info.py +++ b/wranglertools/get_field_info.py @@ -119,7 +119,7 @@ class FieldInfo(object): sheet_order = [ "User", "Award", "Lab", "Document", "Protocol", "Publication", "Organism", "IndividualMouse", "IndividualHuman", "Vendor", "Enzyme", "Construct", - "TreatmentRnai", "TreatmentChemical", "TreatmentAgentbased", "GenomicRegion", + "TreatmentRnai", "TreatmentChemical", "TreatmentAgent", "GenomicRegion", "Target", "Antibody", "Modification", "Image", "Biosource", "BiosampleCellCulture", "Biosample", "FileFastq", "FileProcessed", "FileReference", "FileCalibration", "FileSet", "FileSetCalibration", From 1f7574a45a6b2f9dc201f6db00465e0f2b01c94d Mon Sep 17 00:00:00 2001 From: Sarah Date: Wed, 30 May 2018 16:52:57 -0400 Subject: [PATCH 3/4] Added IndividualFly to sheet_order --- wranglertools/get_field_info.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/wranglertools/get_field_info.py b/wranglertools/get_field_info.py index 60e92734..e9a129bc 100755 --- a/wranglertools/get_field_info.py +++ b/wranglertools/get_field_info.py @@ -118,7 +118,7 @@ class FieldInfo(object): sheet_order = [ "User", "Award", "Lab", "Document", "Protocol", "Publication", "Organism", - "IndividualMouse", "IndividualHuman", "Vendor", "Enzyme", "Construct", + "IndividualMouse", "IndividualFly", "IndividualHuman", "Vendor", "Enzyme", "Construct", "TreatmentRnai", "TreatmentChemical", "TreatmentAgent", "GenomicRegion", "Target", "Antibody", "Modification", "Image", "Biosource", "BiosampleCellCulture", "Biosample", "FileFastq", "FileProcessed", From d1584664ba323edd6780a158cd7a376fcd8da427 Mon Sep 17 00:00:00 2001 From: Sarah Date: Mon, 4 Jun 2018 16:17:35 -0400 Subject: [PATCH 4/4] Edits to sheet_order in get_field_info --- wranglertools/get_field_info.py | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/wranglertools/get_field_info.py b/wranglertools/get_field_info.py index e9a129bc..0b2e31ed 100755 --- a/wranglertools/get_field_info.py +++ b/wranglertools/get_field_info.py @@ -118,14 +118,14 @@ class FieldInfo(object): sheet_order = [ "User", "Award", "Lab", "Document", "Protocol", "Publication", "Organism", - "IndividualMouse", "IndividualFly", "IndividualHuman", "Vendor", "Enzyme", "Construct", - "TreatmentRnai", "TreatmentChemical", "TreatmentAgent", "GenomicRegion", - "Target", "Antibody", "Modification", "Image", "Biosource", - "BiosampleCellCulture", "Biosample", "FileFastq", "FileProcessed", - "FileReference", "FileCalibration", "FileSet", "FileSetCalibration", - "MicroscopeSettingD1", "MicroscopeSettingD2", "MicroscopeSettingA1", "MicroscopeSettingA2", - "FileMicroscopy", "FileSetMicroscopeQc", "ImagingPath", "ExperimentMic", "ExperimentMic_Path", - "ExperimentHiC", "ExperimentCaptureC", "ExperimentRepliseq", "ExperimentAtacseq", + "IndividualMouse", "IndividualFly", "IndividualHuman", "Vendor", "Enzyme", + "Construct", "TreatmentRnai", "TreatmentAgent", "GenomicRegion", "Target", + "Antibody", "Modification", "Image", "Biosource", "BiosampleCellCulture", + "Biosample", "FileFastq", "FileProcessed", "FileReference", "FileCalibration", + "FileSet", "FileSetCalibration", "MicroscopeSettingD1", "MicroscopeSettingD2", + "MicroscopeSettingA1", "MicroscopeSettingA2", "FileMicroscopy", "FileSetMicroscopeQc", + "ImagingPath", "ExperimentMic", "ExperimentMic_Path", "ExperimentHiC", + "ExperimentCaptureC", "ExperimentRepliseq", "ExperimentAtacseq", "ExperimentChiapet", "ExperimentDamid", "ExperimentSeq", "ExperimentSet", "ExperimentSetReplicate", "WorkflowRunSbg", "WorkflowRunAwsem", "OntologyTerm" ]