From 9b6861803e6a25523a056019f0d97ff9a5161613 Mon Sep 17 00:00:00 2001 From: aschroed Date: Wed, 31 Aug 2022 16:08:50 -0400 Subject: [PATCH 1/6] added changelog and test, removed python3.6 as supported version; upgraded dependency for dcicutils 4.5 or above --- CHANGELOG.rst | 213 +++++++++++++++++++++++++ poetry.lock | 359 +++++++++++++++++------------------------- pyproject.toml | 6 +- tests/test_version.py | 12 ++ 4 files changed, 373 insertions(+), 217 deletions(-) create mode 100644 CHANGELOG.rst create mode 100644 tests/test_version.py diff --git a/CHANGELOG.rst b/CHANGELOG.rst new file mode 100644 index 00000000..7716152e --- /dev/null +++ b/CHANGELOG.rst @@ -0,0 +1,213 @@ +=============== +Submit4DN +=============== + +---------- +Change Log +---------- + + +2.3.0 +======= + +* Drop support for Python3.6 + +* Add this CHANGELOG and test warning if it's not updated + +* Update dependency to use dcicutils >-4.5 + +2.2.0 +===== + +2.0.3 +===== + +2.0.0 +===== + +1.2.4 +===== + +1.2.2 +===== + +1.2.1 +===== + +1.2.0 +===== + +1.1.6 +===== + +1.1.5 +===== + +1.1.4 +===== + +1.1.3 +===== + +1.1.2 +===== + +1.1.1 +===== + +1.1.0 +===== + +1.0.9 +===== + +1.0.8 +===== + +1.0.7 +===== + +1.0.6 +===== + +1.0.5 +===== + +1.0.4 +===== + +1.0.3 +===== + +1.0.2 +===== + +1.0.1 +===== + +1.0.0 +===== + +0.9.22 +====== + +0.9.21 +====== + +0.9.20 +====== + +0.9.19 +====== + +0.9.17 +====== + +0.9.16 +====== + +0.9.15 +====== + +0.9.14 +====== + +0.9.13 +====== + +0.9.12 +====== + +0.9.11 +====== + +0.9.10 +====== + +0.9.9 +===== + +0.9.7 +===== + +0.9.6 +===== + +0.9.5 +===== + +0.9.4 +===== + +0.9.3 +===== + +0.9.2 +===== + +0.9.1 +===== + +0.9.0 +===== + +0.8.9 +===== + +0.8.8 +===== + +0.8.7 +===== + +0.8.6 +===== + +0.8.5 +===== + +0.8.4 +===== + +0.8.3 +===== + +0.8.2 +===== + +0.8.1 +===== + +0.8.0 +===== + +0.7.2 +===== + +0.7.1 +===== + +0.7.0 +===== + +0.6.0 +===== + +0.5.1 +===== + +0.5.0 +===== + +0.4.0 +===== + +0.3.0 +===== + +0.2.3 +===== + +0.2.2 +===== + diff --git a/poetry.lock b/poetry.lock index a26c6066..a0791816 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,16 +1,16 @@ [[package]] name = "attrs" -version = "21.4.0" +version = "22.1.0" description = "Classes Without Boilerplate" category = "main" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +python-versions = ">=3.5" [package.extras] -dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"] +dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"] docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"] -tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "cloudpickle"] -tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "cloudpickle"] +tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "zope.interface", "cloudpickle"] +tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "cloudpickle"] [[package]] name = "aws-requests-auth" @@ -25,19 +25,19 @@ requests = ">=0.14.0" [[package]] name = "awscli" -version = "1.22.96" +version = "1.25.65" description = "Universal Command Line Environment for AWS." category = "main" optional = false -python-versions = ">= 3.6" +python-versions = ">= 3.7" [package.dependencies] -botocore = "1.24.41" -colorama = ">=0.2.5,<0.4.4" -docutils = ">=0.10,<0.16" +botocore = "1.27.64" +colorama = ">=0.2.5,<0.4.5" +docutils = ">=0.10,<0.17" PyYAML = ">=3.10,<5.5" rsa = ">=3.1.2,<4.8" -s3transfer = ">=0.5.0,<0.6.0" +s3transfer = ">=0.6.0,<0.7.0" [[package]] name = "beautifulsoup4" @@ -56,27 +56,27 @@ lxml = ["lxml"] [[package]] name = "boto3" -version = "1.21.41" +version = "1.24.64" description = "The AWS SDK for Python" category = "main" optional = false -python-versions = ">= 3.6" +python-versions = ">= 3.7" [package.dependencies] -botocore = ">=1.24.41,<1.25.0" +botocore = ">=1.27.64,<1.28.0" jmespath = ">=0.7.1,<2.0.0" -s3transfer = ">=0.5.0,<0.6.0" +s3transfer = ">=0.6.0,<0.7.0" [package.extras] crt = ["botocore[crt] (>=1.21.0,<2.0a0)"] [[package]] name = "botocore" -version = "1.24.41" +version = "1.27.64" description = "Low-level, data-driven core of boto 3." category = "main" optional = false -python-versions = ">= 3.6" +python-versions = ">= 3.7" [package.dependencies] jmespath = ">=0.7.1,<2.0.0" @@ -84,30 +84,30 @@ python-dateutil = ">=2.1,<3.0.0" urllib3 = ">=1.25.4,<1.27" [package.extras] -crt = ["awscrt (==0.13.8)"] +crt = ["awscrt (==0.14.0)"] [[package]] name = "certifi" -version = "2021.10.8" +version = "2022.6.15" description = "Python package for providing Mozilla's CA Bundle." category = "main" optional = false -python-versions = "*" +python-versions = ">=3.6" [[package]] name = "charset-normalizer" -version = "2.0.12" +version = "2.1.1" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." category = "main" optional = false -python-versions = ">=3.5.0" +python-versions = ">=3.6.0" [package.extras] unicode_backport = ["unicodedata2"] [[package]] name = "colorama" -version = "0.4.3" +version = "0.4.4" description = "Cross-platform colored terminal text." category = "main" optional = false @@ -115,18 +115,18 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "coverage" -version = "6.2" +version = "6.4.4" description = "Code coverage measurement for Python" category = "dev" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.extras] toml = ["tomli"] [[package]] name = "dcicutils" -version = "3.12.0" +version = "4.5.0" description = "Utility package for interacting with the 4DN Data Portal and other 4DN resources" category = "main" optional = false @@ -140,6 +140,7 @@ docker = ">=4.4.4,<5.0.0" elasticsearch = "6.8.1" gitpython = ">=3.1.2,<4.0.0" pytz = ">=2020.4" +PyYAML = ">=5.1,<5.5" requests = ">=2.21.0,<3.0.0" rfc3986 = ">=1.4.0,<2.0.0" structlog = ">=19.2.0,<20.0.0" @@ -168,11 +169,11 @@ tls = ["pyOpenSSL (>=17.5.0)", "cryptography (>=1.3.4)", "idna (>=2.0.0)"] [[package]] name = "docutils" -version = "0.15.2" +version = "0.16" description = "Docutils -- Python Documentation Utilities" category = "main" optional = false -python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "elasticsearch" @@ -210,15 +211,15 @@ smmap = ">=3.0.1,<6" [[package]] name = "gitpython" -version = "3.1.20" -description = "Python Git Library" +version = "3.1.27" +description = "GitPython is a python library used to interact with Git repositories" category = "main" optional = false -python-versions = ">=3.6" +python-versions = ">=3.7" [package.dependencies] gitdb = ">=4.0.1,<5" -typing-extensions = {version = ">=3.7.4.3", markers = "python_version < \"3.10\""} +typing-extensions = {version = ">=3.7.4.3", markers = "python_version < \"3.8\""} [[package]] name = "idna" @@ -230,15 +231,15 @@ python-versions = ">=3.5" [[package]] name = "jmespath" -version = "0.10.0" +version = "1.0.1" description = "JSON Matching Expressions" category = "main" optional = false -python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" +python-versions = ">=3.7" [[package]] name = "openpyxl" -version = "3.0.9" +version = "3.0.10" description = "A Python library to read/write Excel 2010 xlsx/xlsm files" category = "main" optional = false @@ -299,7 +300,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" pytest = ">=2.7" [package.extras] -dev = ["pre-commit", "tox"] +dev = ["tox", "pre-commit"] [[package]] name = "python-dateutil" @@ -314,7 +315,7 @@ six = ">=1.5" [[package]] name = "python-magic" -version = "0.4.25" +version = "0.4.27" description = "File type identification using libmagic" category = "main" optional = false @@ -322,7 +323,7 @@ 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-12,11 +12,11 @@ packages = [ ] [tool.poetry.dependencies] -python = ">=3.6.1,<3.10" +python = ">=3.7.0,<3.10" python-magic = ">=0.4.12" attrs = ">=21.4" openpyxl = "^3.0.9" -dcicutils = ">=3.11.0" +dcicutils = ">=4.5.0" # awscli is not directly imported but is required for aws cp operation awscli = "^1.22.88" diff --git a/tests/test_version.py b/tests/test_version.py new file mode 100644 index 00000000..f22d994c --- /dev/null +++ b/tests/test_version.py @@ -0,0 +1,12 @@ +import os + +from dcicutils.qa_utils import VersionChecker + + +def test_version_checker_use_submit_4DN_changelog(): + + class MyVersionChecker(VersionChecker): + PYPROJECT = os.path.join(os.path.dirname(__file__), "../pyproject.toml") + CHANGELOG = os.path.join(os.path.dirname(__file__), "../CHANGELOG.rst") + + MyVersionChecker.check_version() \ No newline at end of file From 2d378c0033a229140c9ec7fc69f1b5b7455579e5 Mon Sep 17 00:00:00 2001 From: aschroed Date: Wed, 31 Aug 2022 16:33:51 -0400 Subject: [PATCH 2/6] took out 3.6 builds in GA --- .github/workflows/main-publish.yml | 2 +- .github/workflows/main.yml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/main-publish.yml b/.github/workflows/main-publish.yml index 1459210d..1b7a7ff3 100644 --- a/.github/workflows/main-publish.yml +++ b/.github/workflows/main-publish.yml @@ -26,7 +26,7 @@ jobs: - uses: actions/checkout@v2 - uses: actions/setup-python@v2 with: - python-version: 3.6 + python-version: 3.8 - name: Publish env: PYPI_USER: ${{ secrets.PYPI_USER }} diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml index aa1b46ae..96a93b5e 100644 --- a/.github/workflows/main.yml +++ b/.github/workflows/main.yml @@ -21,7 +21,7 @@ jobs: runs-on: ubuntu-18.04 strategy: matrix: - python_version: [3.6, 3.7, 3.8, 3.9] + python_version: [3.7, 3.8, 3.9] # Steps represent a sequence of tasks that will be executed as part of the job steps: From d0572f64ca5d3aaf54762068096af2d091e16fbc Mon Sep 17 00:00:00 2001 From: aschroed Date: Wed, 31 Aug 2022 17:17:48 -0400 Subject: [PATCH 3/6] Major version update to 3 as per Kent's suggestion --- CHANGELOG.rst | 2 +- pyproject.toml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/CHANGELOG.rst b/CHANGELOG.rst index 7716152e..363cb8d6 100644 --- a/CHANGELOG.rst +++ b/CHANGELOG.rst @@ -7,7 +7,7 @@ Change Log ---------- -2.3.0 +3.0.0 ======= * Drop support for Python3.6 diff --git a/pyproject.toml b/pyproject.toml index c5f400ca..b446c0bb 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "Submit4DN" -version = "2.3.0" +version = "3.0.0" description = "Utility package for submitting data to the 4DN Data Portal" authors = ["4DN-DCIC Team "] license = "MIT" From 16ca2402edd0ee215ba84be14ec769b9cb030290 Mon Sep 17 00:00:00 2001 From: aschroed Date: Thu, 1 Sep 2022 11:53:23 -0400 Subject: [PATCH 4/6] removed reference to python3.6 in readme and made dependency of dcicutils>=4.0 --- CHANGELOG.rst | 2 +- README.md | 2 +- poetry.lock | 2 +- pyproject.toml | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/CHANGELOG.rst b/CHANGELOG.rst index 363cb8d6..196598d0 100644 --- a/CHANGELOG.rst +++ b/CHANGELOG.rst @@ -14,7 +14,7 @@ Change Log * Add this CHANGELOG and test warning if it's not updated -* Update dependency to use dcicutils >-4.5 +* Update dependency to use dcicutils >-4.0 2.2.0 ===== diff --git a/README.md b/README.md index 2183d3b4..10fdb1ce 100644 --- a/README.md +++ b/README.md @@ -22,7 +22,7 @@ pip install submit4dn --upgrade ### Troubleshooting -This package is not supported on older Python versions and is supported and tested for versions 3.6 - 3.9. It may work with other python versions but your mileage may vary. +This package is not supported on older Python versions and is supported and tested for versions 7 - 3.9. It may work with other python versions but your mileage may vary. It is recommended to install this package in a virtual environment to avoid dependency clashes. diff --git a/poetry.lock b/poetry.lock index a0791816..7e29d90d 100644 --- a/poetry.lock +++ b/poetry.lock @@ -527,7 +527,7 @@ tests = ["nose (<1.3.0)", "coverage", "mock", "pastedeploy", "wsgiproxy2", "pyqu [metadata] lock-version = "1.1" python-versions = ">=3.7.0,<3.10" -content-hash = "69d85c8d7f917630a9f3e5075f9033f7fe435283e361c45b917c5ca9bb6e2fc6" +content-hash = "c851ac9587a6baefead93f0f4361e6e7b2df380344cf822228d6bb2fcb64b683" [metadata.files] attrs = [ diff --git a/pyproject.toml b/pyproject.toml index b446c0bb..7fb6b74e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -16,7 +16,7 @@ python = ">=3.7.0,<3.10" python-magic = ">=0.4.12" attrs = ">=21.4" openpyxl = "^3.0.9" -dcicutils = ">=4.5.0" +dcicutils = ">=4.0" # awscli is not directly imported but is required for aws cp operation awscli = "^1.22.88" From e7bd93e657607c6b0b8fa43c47099b489d391016 Mon Sep 17 00:00:00 2001 From: aschroed Date: Thu, 1 Sep 2022 12:47:59 -0400 Subject: [PATCH 5/6] fix typo --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 10fdb1ce..6f4b7cd8 100644 --- a/README.md +++ b/README.md @@ -22,7 +22,7 @@ pip install submit4dn --upgrade ### Troubleshooting -This package is not supported on older Python versions and is supported and tested for versions 7 - 3.9. It may work with other python versions but your mileage may vary. +This package is not supported on older Python versions and is supported and tested for versions 3.7 - 3.9. It may work with other python versions but your mileage may vary. It is recommended to install this package in a virtual environment to avoid dependency clashes. From 88795953b434cb5701b03be1a01947329aa3f531 Mon Sep 17 00:00:00 2001 From: aschroed Date: Thu, 1 Sep 2022 13:30:36 -0400 Subject: [PATCH 6/6] added PR and fixed typo --- CHANGELOG.rst | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/CHANGELOG.rst b/CHANGELOG.rst index 196598d0..76c16365 100644 --- a/CHANGELOG.rst +++ b/CHANGELOG.rst @@ -10,11 +10,13 @@ Change Log 3.0.0 ======= +`PR 159: Remove Python3.6 support `_ + * Drop support for Python3.6 * Add this CHANGELOG and test warning if it's not updated -* Update dependency to use dcicutils >-4.0 +* Update dependency to use dcicutils >=4.0 2.2.0 =====