diff --git a/download_command_list.txt b/download_command_list.txt
deleted file mode 100644
index b4d3d8ca2..000000000
--- a/download_command_list.txt
+++ /dev/null
@@ -1,4 +0,0 @@
-aws s3 cp s3://my-tibanna-test-input-bucket/smallfile1 /data1/input/smallfile1 
-aws s3 cp s3://my-tibanna-test-input-bucket/smallfile2 /data1/input/smallfile2 
-aws s3 cp s3://my-tibanna-test-input-bucket/smallfile3 /data1/input/smallfile3 
-aws s3 cp s3://my-tibanna-test-input-bucket/smallfile4 /data1/input/smallfile4 
diff --git a/env_command_list.txt b/env_command_list.txt
deleted file mode 100644
index deeee7c5a..000000000
--- a/env_command_list.txt
+++ /dev/null
@@ -1,5 +0,0 @@
-WDL_URL=https://raw.githubusercontent.com/4dn-dcic/tibanna/wdl2/examples/merge
-MAIN_WDL=merge.wdl
-OUTBUCKET=my-tibanna-test-bucket
-PUBLIC_POSTRUN_JSON=0
-PRESERVED_ENV_OPTION=""
diff --git a/inputs.yml b/inputs.yml
deleted file mode 100644
index 226038814..000000000
--- a/inputs.yml
+++ /dev/null
@@ -1,12 +0,0 @@
-{
-    "merge.smallfiles": [
-        [
-            "/data1/input/smallfile1", 
-            "/data1/input/smallfile2"
-        ], 
-        [
-            "/data1/input/smallfile3", 
-            "/data1/input/smallfile4"
-        ]
-    ]
-}
\ No newline at end of file