Circa in Silico is a web-based application that uses standard algorithms to render synthetic circadian mRNA transcript data sets for a multifaceted approach to studying circadian rhythms.
Getting Started:
Click on the boxes on the left to manipulate the parameters by either entering a value or using the arrows. After programming the desired values, use the "Download" button to retrieve the raw data file for local visualisation on a variety of platforms (R, MatLab, Excel, etc).
For External use, please cite:
- Hughes et al. JBR "Guidelines for Genome-Scale Analysis of Biological Rhythms"
- Hughes et al. JBR (2010) JTK_Cycle [...]
Below are a few visualisations that showcase the utility of CircaInSilico in studying circadian rhythms:
