ereefs

An R package containing few useful functions to make accessing eReefs and other CSIRO-EMS output files easier.

These functions rely on the netcdf4 package, which works best under Linux or MacOS. The functions provided here should work under Windows for locally-stored files, but will also work for OPeNDAP-served netcdf files under Linux or MacOS. They can be made to work for OPenDAP-served files under Windows with a custom-compiled version of the ncdf4 package -- contact me, Barbara Robson (brobson@aims.gov.au) for details.

Functions to extract time-series from eReefs netcdf files

get_ereefs_ts()
get_ereefs_depth_integrated_ts ()
get_ereefs_depth_specified_ts()

Functions to produce maps or animations of eReefs model outputs

map_ereefs()
map_ereefs_movie()

Function to calculate optical plume class from modelled surface reflectances

plume_class()

Functions to extract profiles and vertical slices

get_ereefs_profile()
get_ereefs_slice()

Functions to plot profiles

plot_ereefs_profile()
plot_ereefs_zvt()

Functions to convert outputs to GIS formats

poly2sp()
sp2raster()