These codes are used for image analysis Works best with MATLAB 2016B. You need the function C2 present in the % same folder as this code % C1-C3 codes do the following % 1) Loads the approximate position track data file from ImageJ 'Trackmate' % 2) Loads the .avi TIRF image video file of a rotating cell % 3) crops an area around the approximate position of a foci % 4) Fits a 3D gaussian to provide the sub pixel average position of the foci % % Use the following example files provided with this code to test: % 1) TrackMate data file: C1_313_example_tracks.mat % 2) Avi file: 313_copy_20.avi %% % C4: Adds successive images of an image stack of a rotating cell abnd cretaes a new image matrix