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CytoDataViz.Rproj
DESCRIPTION
NAMESPACE
README.md

README.md

CytoDataViz- R package for cytometry data visualization and clustering

Fucntions

  1. fplot Plot expression using ggridges
  • e.g. fplot(flowSet/flowFrame, all_markers/specified_marker)
  1. emb Gererate clusters using EmbedSOM algorithm
  • e.g. emb(flowSet)
  1. cplot Plot clusters and metacluster plot using ggplot
  • e.g. cplot(output_from_emb)
  1. plotlabels Assign user specified name to clusters.
  • e.g. plotlabels(output_from_emb)
  1. hplot Plot heat maps for each markers
  • e.g. hplot(output_from_emb, specified_columns)
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