From c8e701c3bb1c4ffd3e8f532115a222197a221013 Mon Sep 17 00:00:00 2001 From: anna-bogdanova Date: Mon, 24 Feb 2025 12:19:53 +0100 Subject: [PATCH 1/2] add environment.yaml --- environment.yaml | 24 ++++++++++++++++++++++++ 1 file changed, 24 insertions(+) create mode 100644 environment.yaml diff --git a/environment.yaml b/environment.yaml new file mode 100644 index 0000000..0aa97c8 --- /dev/null +++ b/environment.yaml @@ -0,0 +1,24 @@ +name: /Users/abogdanova/python_course/day1/label_coins/venv +channels: + - conda-forge + - bioconda +dependencies: + - bzip2=1.0.8=h99b78c6_7 + - ca-certificates=2025.1.31=hf0a4a13_0 + - libexpat=2.6.4=h286801f_0 + - libffi=3.4.2=h3422bc3_5 + - liblzma=5.6.4=h39f12f2_0 + - libsqlite=3.49.1=h3f77e49_1 + - libzlib=1.3.1=h8359307_2 + - ncurses=6.5=h5e97a16_3 + - openssl=3.4.1=h81ee809_0 + - pip=25.0.1=pyh8b19718_0 + - python=3.12.9=hc22306f_0_cpython + - readline=8.2=h1d1bf99_2 + - setuptools=75.8.0=pyhff2d567_0 + - tk=8.6.13=h5083fa2_1 + - tzdata=2025a=h78e105d_0 + - wheel=0.45.1=pyhd8ed1ab_1 + - pip: + - numpy==2.2.3 +prefix: /Users/abogdanova/python_course/day1/label_coins/venv From dee870482705b781f22002635dfd7b809a72d1d5 Mon Sep 17 00:00:00 2001 From: anna-bogdanova Date: Sun, 2 Mar 2025 20:58:09 +0100 Subject: [PATCH 2/2] add env file with dependecies --- venv.yml | 166 +++++++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 166 insertions(+) create mode 100644 venv.yml diff --git a/venv.yml b/venv.yml new file mode 100644 index 0000000..a2cba8b --- /dev/null +++ b/venv.yml @@ -0,0 +1,166 @@ +name: venv +channels: + - conda-forge + - bioconda +dependencies: + - bzip2=1.0.8=h99b78c6_7 + - ca-certificates=2025.1.31=hf0a4a13_0 + - libexpat=2.6.4=h286801f_0 + - libffi=3.4.2=h3422bc3_5 + - liblzma=5.6.4=h39f12f2_0 + - libsqlite=3.49.1=h3f77e49_1 + - libzlib=1.3.1=h8359307_2 + - ncurses=6.5=h5e97a16_3 + - openssl=3.4.1=h81ee809_0 + - pip=25.0.1=pyh8b19718_0 + - python=3.11.11=hc22306f_1_cpython + - readline=8.2=h1d1bf99_2 + - setuptools=75.8.0=pyhff2d567_0 + - tk=8.6.13=h5083fa2_1 + - wheel=0.45.1=pyhd8ed1ab_1 + - pip: + - alabaster==1.0.0 + - altair==5.5.0 + - annotated-types==0.7.0 + - app-model==0.3.1 + - appdirs==1.4.4 + - appnope==0.1.4 + - asttokens==3.0.0 + - attrs==25.1.0 + - babel==2.17.0 + - blinker==1.9.0 + - build==1.2.2.post1 + - cachetools==5.5.2 + - cachey==0.2.1 + - certifi==2025.1.31 + - charset-normalizer==3.4.1 + - click==8.1.8 + - cloudpickle==3.1.1 + - comm==0.2.2 + - crc32c==2.7.1 + - dask==2025.2.0 + - debugpy==1.8.12 + - decorator==5.2.1 + - deprecated==1.2.18 + - docstring-parser==0.16 + - docutils==0.21.2 + - donfig==0.8.1.post1 + - executing==2.2.0 + - flexcache==0.3 + - flexparser==0.4 + - freetype-py==2.5.1 + - fsspec==2025.2.0 + - gitdb==4.0.12 + - gitpython==3.1.44 + - heapdict==1.0.1 + - hsluv==5.0.4 + - idna==3.10 + - imageio==2.37.0 + - imagesize==1.4.1 + - importlib-metadata==8.6.1 + - in-n-out==0.2.1 + - ipykernel==6.29.5 + - ipython==8.32.0 + - jedi==0.19.2 + - jinja2==3.1.5 + - jsonschema==4.23.0 + - jsonschema-specifications==2024.10.1 + - jupyter-client==8.6.3 + - jupyter-core==5.7.2 + - kiwisolver==1.4.8 + - lazy-loader==0.4 + - llvmlite==0.44.0 + - locket==1.0.0 + - magicgui==0.10.0 + - markdown-it-py==3.0.0 + - markupsafe==3.0.2 + - matplotlib-inline==0.1.7 + - mdurl==0.1.2 + - napari==0.5.6 + - napari-console==0.1.3 + - napari-plugin-engine==0.2.0 + - napari-plugin-manager==0.1.4 + - napari-svg==0.2.1 + - narwhals==1.28.0 + - nest-asyncio==1.6.0 + - networkx==3.4.2 + - npe2==0.7.8 + - numba==0.61.0 + - numcodecs==0.15.1 + - numpy==2.1.3 + - numpydoc==1.8.0 + - packaging==24.2 + - pandas==2.2.3 + - parso==0.8.4 + - partd==1.4.2 + - partsegcore-compiled-backend==0.15.11 + - pexpect==4.9.0 + - pillow==11.1.0 + - pint==0.24.4 + - platformdirs==4.3.6 + - pooch==1.8.2 + - prompt-toolkit==3.0.50 + - protobuf==5.29.3 + - psutil==7.0.0 + - psygnal==0.12.0 + - ptyprocess==0.7.0 + - pure-eval==0.2.3 + - pyarrow==19.0.1 + - pyconify==0.2.1 + - pydantic==2.10.6 + - pydantic-compat==0.1.2 + - pydantic-core==2.27.2 + - pydeck==0.9.1 + - pygments==2.19.1 + - pyopengl==3.1.9 + - pyproject-hooks==1.2.0 + - pyqt5==5.15.11 + - pyqt5-qt5==5.15.16 + - pyqt5-sip==12.17.0 + - python-dateutil==2.9.0.post0 + - pytz==2025.1 + - pyyaml==6.0.2 + - pyzmq==26.2.1 + - qtconsole==5.6.1 + - qtpy==2.4.3 + - referencing==0.36.2 + - requests==2.32.3 + - rich==13.9.4 + - roman-numerals-py==3.1.0 + - rpds-py==0.23.1 + - scikit-image==0.25.2 + - scipy==1.15.2 + - shellingham==1.5.4 + - six==1.17.0 + - smmap==5.0.2 + - snowballstemmer==2.2.0 + - sphinx==8.2.1 + - sphinxcontrib-applehelp==2.0.0 + - sphinxcontrib-devhelp==2.0.0 + - sphinxcontrib-htmlhelp==2.1.0 + - sphinxcontrib-jsmath==1.0.1 + - sphinxcontrib-qthelp==2.0.0 + - sphinxcontrib-serializinghtml==2.0.0 + - stack-data==0.6.3 + - streamlit==1.42.2 + - superqt==0.7.1 + - tabulate==0.9.0 + - tenacity==9.0.0 + - tifffile==2025.2.18 + - toml==0.10.2 + - tomli-w==1.2.0 + - toolz==1.0.0 + - tornado==6.4.2 + - tqdm==4.67.1 + - traitlets==5.14.3 + - triangle==20250106 + - typer==0.15.1 + - typing-extensions==4.12.2 + - tzdata==2025.1 + - urllib3==2.3.0 + - vispy==0.14.3 + - watchdog==6.0.0 + - wcwidth==0.2.13 + - wrapt==1.17.2 + - zarr==3.0.4 + - zipp==3.21.0