African Genomics Data Hub (AfriGen-D)
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Phenotype_Collection_Toolkits
Phenotype_Collection_Toolkits PublicHealth and environmental data collection toolkits designed for genomic research clinical database development
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Repositories
- vcf-liftover Public
- imputationserver2 Public Forked from genepi/imputationserver2
Imputation Server 2 workflow to facilitate genotype imputation at scale.
- Phenotype_Collection_Toolkits Public
Health and environmental data collection toolkits designed for genomic research clinical database development
- isb-capetown-2026-workshop Public
Hands-on tutorial for genotype imputation and data analysis using AfriGen-D's curated African genomic resources -- 19th Annual International Biocuration Conference, Cape Town, April 2026
- imputation-qc Public
Post-imputation QC: R\u00b2 distribution, MAF-stratified R\u00b2, quality-cutoff filtering. Service-integrated Nextflow pipeline for FedImpute / WES.
- gwas-training Public
GWAS Training pipeline: VCF-to-PLINK conversion, QC, HWE filtering, PCA, and association analysis using PLINK2. Emits structured errors for the AfriGen-D FedImpute platform.
- checkref Public
A tool for checking allele switches between a target VCF and a reference panel legend file, with options to fix identified issues
- agmp-docs Public
- guidelines Public
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