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README.md

laggedLGCP

R package for fitting multivariate Poisson or Coalescent processes with a time lag.

Installation

  1. Install phylodyn as detailed at mdkarcher/phylodyn
  2. Install rstan -- http://mc-stan.org/interfaces/rstan.
  3. Install rstantools via CRAN:
install.packages("rstantools")
  1. Install laggedLGCP via
devtools::install_github("AlexanderVR/laggedLGCP", args="--preclean", build_vignettes = FALSE)

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Latent Gaussian process model for fitting multivariate Poisson or Coalescent processes with a time lag.

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