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Silent FastQC Failures #683

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Miserlou opened this issue Oct 1, 2018 · 0 comments
Closed

Silent FastQC Failures #683

Miserlou opened this issue Oct 1, 2018 · 0 comments
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Electric Eevee

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@Miserlou
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Miserlou commented Oct 1, 2018 

data-refinery-log-group-circleci-prod log-stream-processor-docker-circleci-prod 2018-09-29 23:03:24,101 i-094075f4b46b5ec64 data_refinery_workers.processors.salmon ERROR [processor_job: 9187]: Shell call to FastQC failed with error message: Started analysis of ERR1631915.fastq
data-refinery-log-group-circleci-prod log-stream-processor-docker-circleci-prod 2018-09-29 23:03:24,279 i-094075f4b46b5ec64 data_refinery_workers.processors.utils ERROR [failure_reason: Started analysis of ERR1631915.fastq] [processor_job: 9187]: Processor function _run_fastqc failed. Terminating pipeline.

Not a whole lot to go with here - my guess is that this is a memory issue again.

Hopefully our strategy of increasingly large Salmon placements will address all of these issues together.
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