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diagrams
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00a-reproducibility_cmdline.md
00b-additional_approaches.md
01-qc_trim_quant.md
02-gastric_cancer_tximport.Rmd Addition of `tximport` object diagram in 02 notebook (#149) Aug 2, 2019
02-gastric_cancer_tximport.nb.html Addition of `tximport` object diagram in 02 notebook (#149) Aug 2, 2019
03-gastric_cancer_exploratory.Rmd Add diagrams in RNA-seq (#148) Aug 1, 2019
03-gastric_cancer_exploratory.nb.html Add diagrams in RNA-seq (#148) Aug 1, 2019
04-nb_cell_line_tximport.md Add diagrams in RNA-seq (#148) Aug 1, 2019
05-nb_cell_line_DESeq2.Rmd
05-nb_cell_line_DESeq2.nb.html Add diagrams in RNA-seq (#148) Aug 1, 2019
06-bulk_rnaseq_exercise.Rmd Add diagrams in RNA-seq (#148) Aug 1, 2019
README.md Create RNA-seq readme file. (#150) Aug 15, 2019

README.md

RNA-Seq Training Module

This CCDL-designed module covers the analysis of RNA-seq data using Salmon. It is designed to be taught in approximately 3.5 hours. It depends on knowledge gained in the intro to R module and analyses are performed within a Docker container. It covers quality control steps, gene expression abundance estimation, and certain downstream analyses. The notebooks that comprise this module are:

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