scRNA-Seq Training Module
This CCDL-designed module covers the analysis of single-cell RNA-seq data using Salmon's Alevin and scater/scran packages. It is designed to be taught in approximately 2.5 hours. It depends on knowledge gained in the Intro to R module and analyses are performed within a Docker container. It covers normalization and dimension reduction methods that can be used for both tag-based and full-length single-cell data, as well as the quantification of tag-based scRNA-seq data.
The notebooks that comprise this module are: