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00-scRNA-seq_introduction.md
01-normalizing_scRNA-seq.Rmd
01-normalizing_scRNA-seq.nb.html
02-tag-based_pre-processing_scRNA-seq.html
02-tag-based_pre-processing_scRNA-seq.md
03-dimension_reduction_scRNA-seq.Rmd
03-dimension_reduction_scRNA-seq.nb.html
04-scrnaseq_exercise.Rmd
README.md

README.md

scRNA-Seq Training Module

This CCDL-designed module covers the analysis of single-cell RNA-seq data using Salmon's Alevin and scater/scran packages. It is designed to be taught in approximately 2.5 hours. It depends on knowledge gained in the Intro to R module and analyses are performed within a Docker container. It covers normalization and dimension reduction methods that can be used for both tag-based and full-length single-cell data, as well as the quantification of tag-based scRNA-seq data.

The notebooks that comprise this module are:

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