Calculating BMI at Age from FHIR Documents Blog Post
Branch: master
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Type Name Latest commit message Commit time
Failed to load latest commit information.
data
.gitignore
FHIR BMI Results.ipynb
MaleBMI2-20.png
README.md
requirements.txt

README.md

bmi-fhir

Calculating BMI at Age from FHIR Documents Blog Post. This blog post originally appeared on Algorex Health.

nbviewer

This repository contains a Jupyter notebook that demonstrates how to create a population BMI chart from FHIR documents.

Set-up

Clone the repo

git clone https://github.com/AlgorexHealth/bmi-fhir.git
cd bmi-fhir

Initialize a virtual environment and build required libraries

python3 -m venv venv
source venv/bin/activate
pip install -r requirements.txt

Ensure that you have downloaded and unzipped the FHIR files need. They should all be in data/fhir

cd data
wget  https://s3.amazonaws.com/algorex-working-data/pediatric-fhir-data/fhir.zip
unzip fhir.zip

Start a notebook and run

jupyter notebook