Calculating BMI at Age from FHIR Documents Blog Post. This blog post originally appeared on Algorex Health.
This repository contains a Jupyter notebook that demonstrates how to create a population BMI chart from FHIR documents.
Clone the repo
git clone https://github.com/AlgorexHealth/bmi-fhir.git cd bmi-fhir
Initialize a virtual environment and build required libraries
python3 -m venv venv source venv/bin/activate pip install -r requirements.txt
Ensure that you have downloaded and unzipped the FHIR files need. They should all be in
cd data wget https://s3.amazonaws.com/algorex-working-data/pediatric-fhir-data/fhir.zip unzip fhir.zip
Start a notebook and run