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Hi there 👋

Most of my work tied to my current and last few $JOB roles isn't public, but I developed some open source R and python packages during my time as a PhD student at Stanford in the Greenleaf Lab and have contributed to a few projects on the side since.

My graduate school projects are the ones in the pinned repositories that are part of the GreenleafLab organization. During graduate school I also developed as part of an internship with Genentech the iheatmapr package for interactive heatmaps in R.

Most of my side projects are around data visualization -- I've contributed to the vegawidget ecoysystem of R packages, and created the vegabrite package, which is a port of vega-lite to R via an auto-generated api.


  1. Complex, interactive heatmaps in R

    R 256 33

  2. Build vega-lite specs in R

    R 36

  3. gglabeller Public

    Shiny gadget for labeling points on ggplot

    R 179 20

  4. chromatin Variability Across Regions (of the genome!)

    R 112 29

  5. nucleosome calling using ATAC-seq

    Python 97 29

  6. Fast motif matching in R

    C++ 28 6

1,102 contributions in the last year

Dec Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Mon Wed Fri

Contribution activity

November 2022

Created 1 commit in 1 repository
Opened 1 pull request in 1 repository
vegawidget/vegabrite 1 merged
42 contributions in private repositories Nov 1 – Nov 21

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