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This repository contains code to generate standardized cell type nomenclature from an R "dendrogram".
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CONTRIBUTION
LICENSE
README.md
build_annotation_tables.R
build_annotation_tables.md
dend_humanMTG.RData
nomenclature_table_humanMTG.csv
required_scripts.R

README.md

nomenclature

This repository contains code to generate standardized cell type nomenclature from an R "dendrogram". Our nomenclature schema is described in detail on our website, here.

CLICK HERE to get started, or download the build_annotation_tables.r file.

Please visit the Cell Taxonomy category of our community forum to provide suggestions about the nomenclature schema itself.

License

The license for this package is available on Github at: https://github.com/AllenInstitute/allen_institute_nomenclature/blob/master/LICENSE

Level of Support

This tool will only be updated to correct errors and to reflect updates in the nomenclature schema.

Contribution Agreement

If you contribute code to this repository through pull requests or other mechanisms, you are subject to the Allen Institute Contribution Agreement, which is available in full at: https://github.com/AllenInstitute/allen_institute_nomenclature/blob/master/CONTRIBUTION

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