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@AlphaGenes

AlphaGenes

Animal and plant breeding software

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  1. AlphaImpute2 AlphaImpute2 Public

    AlphaImpute2: pedigree- and population-based genotype imputation

    Python 11 7

  2. AlphaPlantImpute2 AlphaPlantImpute2 Public

    AlphaPlantImpute2: Genotype imputation for plant populations

    Python 6 3

  3. AlphaMate AlphaMate Public

    Fortran 5 4

  4. tinyhouse tinyhouse Public

    tinyhouse: Internal (house) functions used across many AlphaGenes tools

    Python 2 7

  5. AlphaAssign AlphaAssign Public

    Roff 2 2

  6. AlphaFamImpute AlphaFamImpute Public

    Python 2 2

Repositories

Showing 10 of 22 repositories
  • tinyhouse Public

    tinyhouse: Internal (house) functions used across many AlphaGenes tools

    AlphaGenes/tinyhouse’s past year of commit activity
    Python 2 7 6 1 Updated May 15, 2025
  • AlphaPeel Public

    AlphaPeel: calling, phasing, and imputing genotype and sequence data in pedigrees

    AlphaGenes/AlphaPeel’s past year of commit activity
    Roff 2 MIT 12 81 2 Updated May 5, 2025
  • AlphaImpute2 Public

    AlphaImpute2: pedigree- and population-based genotype imputation

    AlphaGenes/AlphaImpute2’s past year of commit activity
    Python 11 MIT 7 15 0 Updated Apr 25, 2025
  • AlphaPart Public

    AlphaPart implements a method for partitioning genetic trends to quantify the sources of genetic gain in breeding programmes

    AlphaGenes/AlphaPart’s past year of commit activity
    R 0 3 11 0 Updated Apr 18, 2025
  • AlphaPhase Public
    AlphaGenes/AlphaPhase’s past year of commit activity
    Fortran 2 MIT 2 1 1 Updated Apr 2, 2025
  • AlphaSimR Public Forked from gaynorr/AlphaSimR

    R package for breeding program simulations

    AlphaGenes/AlphaSimR’s past year of commit activity
    R 0 21 0 0 Updated Dec 15, 2024
  • AlphaFamImpute Public
    AlphaGenes/AlphaFamImpute’s past year of commit activity
    Python 2 MIT 2 6 0 Updated Jun 11, 2024
  • AlphaPlantImpute2 Public

    AlphaPlantImpute2: Genotype imputation for plant populations

    AlphaGenes/AlphaPlantImpute2’s past year of commit activity
    Python 6 MIT 3 4 0 Updated Jul 5, 2023
  • AlphaAssign Public
    AlphaGenes/AlphaAssign’s past year of commit activity
    Roff 2 MIT 2 4 0 Updated Jul 5, 2023
  • AlphaCMakeFiles Public
    AlphaGenes/AlphaCMakeFiles’s past year of commit activity
    CMake 0 1 0 0 Updated Feb 12, 2023
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