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  • Imperial College London


@CGATOxford @jknightlab @EpiCompBio @cgat-developers


  1. Boilerplate tools and templates for setting up a data analysis project.

    Python 1

  2. Welcome, general notes, explanations, and the like for the EpiComBio group


  3. Teaching materials for the molecular and genomics epidemiology module at Imperial


  4. Core functionality of the CGAT code

    Python 15 6

  5. Convenience functions to help pre-process and analyse data in R


  6. A repo to keep tests for drmaa, ruffus and cgat-core.

    Python 1

398 contributions in the last year

Apr May Jun Jul Aug Sep Oct Nov Dec Jan Feb Mar Mon Wed Fri

Contribution activity

March 2019

Created a pull request in cgat-developers/cgat-core that received 3 comments

return alternative value if benchmark data is None

Data collected for benchmarking can return None for e.g. cpu_t, start_time and end_time which results in a TypeError. See issue #83

+1 −1 3 comments

Created an issue in cgat-developers/cgat-core that received 2 comments

collecting benchmark data pbspro

Hello, I'm getting the following error on a pbs pro cluster: Exception #1 'builtins.TypeError(float() argument must be a string or a number, not '…


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