@Arabidopsis-Information-Portal

Araport

The Arabidopsis Information Portal

Pinned repositories

  1. adama

    Adaptible Data And Microservices API

    JavaScript 5 3

  2. intermine

    Forked from intermine/intermine

    This is the code base for Thalemine, a data warehouse system based on InterMine and used in Araport, the Arabidopsis Information Portal.

    Java 3 2

  3. jbrowse

    Forked from GMOD/jbrowse

    A modern genome browser built with JavaScript and HTML5.

    JavaScript 1 3

  4. agave-ncbi-blast

    Agave and Docker build files for the back end of our BLAST app

    Shell 1

  5. science_apps_workspace

    Drupal module for the Araport Science Apps Workspace.

    PHP 1 1

  6. generator-aip-science-app

    Yeoman Generator for building Science Apps for the Arabidopsis Information Portal.

    JavaScript 2 2

  • Plugin to allow the co-existence of the Hierarchical and Faceted Track Selectors in the GMOD JBrowse Genome Browser

    JavaScript 5 3 MIT Updated Jun 11, 2018
  • ThaleMine - an InterMine with Arabidopsis genomic data

    Java Updated Mar 22, 2018
  • Data Sources for ThaleMine - an InterMine with Arabidopsis genomic data

    Java Updated Mar 16, 2018
  • All scripts that used to be in the main intermine repository in bio/scripts and intermine/scripts

    PLpgSQL 3 LGPL-2.1 Updated Mar 16, 2018
  • Configuration and miscellaneous support files for Araport JBrowse installation

    Shell 1 4 LGPL-2.1 Updated Feb 12, 2018
  • This is the code base for Thalemine, a data warehouse system based on InterMine and used in Araport, the Arabidopsis Information Portal.

    Java 3 304 Updated Feb 7, 2018
  • ADAMA web-service wrapper to transform "Translated small ORFs" GFF3 data (Hsu et al. 2016) into JBrowse compatible JSON

    Python Updated Jan 14, 2018
  • CDN

    Forked from intermine/CDN

    JavaScript, Cascading Style Sheet Content Delivery Network

    JavaScript 24 Updated Nov 20, 2017
  • JavaScript Updated Nov 20, 2017
  • Illustrative web service for ATTED II coexpression web service

    Python 5 Updated Aug 2, 2017
  • Generates an NCBI .tbl file of annotations on a genome.

    Python 8 MIT Updated May 15, 2017
  • jbrowse

    Forked from GMOD/jbrowse

    A modern genome browser built with JavaScript and HTML5.

    JavaScript 1 148 LGPL-2.1 Updated May 4, 2017
  • Custom JBrowse plugin to map JBrowse/Store/SeqFeature/REST to the Araport Adama API endpoints

    JavaScript MIT Updated May 4, 2017
  • JBrowse plugin enabling the ability to enrich the Ensembl Variants (VCF) track with metadata from rest.ensemblgenomes.org API

    JavaScript MIT Updated May 4, 2017
  • JBrowse plugin enabling the ability to enrich the 1001 Genomes Variants track with metadata from 1001genomes.org Master Accession List API

    JavaScript MIT Updated May 4, 2017
  • JBrowse plugin enabling the ability to dynamically load tracks from data/configurations stored in the Cyverse Data Store

    JavaScript 1 MIT Updated Apr 21, 2017
  • Adaptible Data And Microservices API

    JavaScript 5 3 Updated Mar 6, 2017
  • Shell Updated Jan 11, 2017
  • ADAMA adapters for querying Araport11 annotation data

    Python 1 Updated Jan 5, 2017
  • Docker image for the Araport portal.

    PHP Updated Dec 22, 2016
  • Drupal module for the Araport Science Apps Workspace.

    PHP 1 1 Updated Dec 22, 2016
  • Drupal modules developed for Araport functionality.

    PHP Updated Dec 22, 2016
  • Arabadopsis Information Portal Theme, a Bootstrap 3 theme based on http://drupal.org/project/bootstrap.

    CSS Updated Dec 22, 2016
  • Viewer app for rendering phylogenetic trees.

    JavaScript Updated Oct 10, 2016
  • Adapter for PMR web services.

    Python 1 GPL-2.0 Updated Sep 26, 2016
  • ADAMA adapters for various Phytozome webservices

    1 Updated Aug 31, 2016
  • Visualizing tabix-indexed files located on the CyVerse Data Store using the JBrowse Genome Browser

    2 Updated Jul 28, 2016
  • Yeoman Generator for building Science Apps for the Arabidopsis Information Portal.

    JavaScript 2 2 Updated Jul 26, 2016
  • Araport demo science app that uses the ADAMA layer to query interaction data from EBI

    JavaScript Updated Jul 20, 2016
  • ADAMA adapters for querying EBI IntAct PSICQUIC data

    Python 1 Updated Jul 20, 2016