Agave and Docker build files for the back end of our BLAST app
This is the code base for Thalemine, a data warehouse system based on InterMine and used in Araport, the Arabidopsis Information Portal.
Plugin to allow the co-existence of the Hierarchical and Faceted Track Selectors in the GMOD JBrowse Genome Browser
ADAMA adapters for querying Araport11 annotation data
Docker image for the Araport portal.
Drupal module for the Araport Science Apps Workspace.
Drupal modules developed for Araport functionality.
Arabadopsis Information Portal Theme, a Bootstrap 3 theme based on http://drupal.org/project/bootstrap.
Viewer app for rendering phylogenetic trees.
Adapter for PMR web services.
Illustrative web service for ATTED II coexpression web service
ADAMA adapters for various Phytozome webservices
Visualizing tabix-indexed files located on the CyVerse Data Store using the JBrowse Genome Browser
Yeoman Generator for building Science Apps for the Arabidopsis Information Portal.
Araport demo science app that uses the ADAMA layer to query interaction data from EBI
ADAMA adapters for querying EBI IntAct PSICQUIC data
Tree visualization using TnT
Displays tables containing protein phosphorylation data from PhosPhAt.
Araport demo science app that uses the ADAMA layer to query RT-qPCR expression data from JCVI
Hormone and Gene Regulatory Networks App.
Araport BAR expression viewer app
This app displays a table of the proteins in the ThaleMine database.
Araport app to return gene information from ThaleMine.
Draw plots as described by PMR web services