@Arabidopsis-Information-Portal

Araport

The Arabidopsis Information Portal

Pinned repositories

  1. adama

    Araport Data And Microservices API

    JavaScript 4 3

  2. intermine

    Forked from intermine/intermine

    This is the code base for Thalemine, a data warehouse system based on InterMine and used in Araport, the Arabidopsis Information Portal.

    Java 3 2

  3. jbrowse

    Forked from GMOD/jbrowse

    A modern genome browser built with JavaScript and HTML5.

    JavaScript 1 3

  4. agave-ncbi-blast

    Agave and Docker build files for the back end of our BLAST app

    Shell

  5. science_apps_workspace

    Drupal module for the Araport Science Apps Workspace.

    PHP 1 1

  6. generator-aip-science-app

    Yeoman Generator for building Science Apps for the Arabidopsis Information Portal.

    JavaScript 2 2

  • This is the code base for Thalemine, a data warehouse system based on InterMine and used in Araport, the Arabidopsis Information Portal.

    Java 3 263 Updated Feb 21, 2017
  • CDN

    Forked from intermine/CDN

    JavaScript, Cascading Style Sheet Content Delivery Network

    JavaScript 22 Updated Feb 21, 2017
  • Plugin to allow the co-existence of the Hierarchical and Faceted Track Selectors in the GMOD JBrowse Genome Browser

    JavaScript 3 Updated Feb 9, 2017
  • Shell Updated Jan 11, 2017
  • ADAMA adapters for querying Araport11 annotation data

    Python 1 Updated Jan 5, 2017
  • Docker image for the Araport portal.

    PHP Updated Dec 22, 2016
  • Drupal module for the Araport Science Apps Workspace.

    PHP 1 1 Updated Dec 22, 2016
  • Drupal modules developed for Araport functionality.

    PHP Updated Dec 22, 2016
  • Arabadopsis Information Portal Theme, a Bootstrap 3 theme based on http://drupal.org/project/bootstrap.

    CSS Updated Dec 22, 2016
  • Viewer app for rendering phylogenetic trees.

    JavaScript Updated Oct 10, 2016
  • jbrowse

    Forked from GMOD/jbrowse

    A modern genome browser built with JavaScript and HTML5.

    visualization javascript genomics gmod genome-browser jbrowse

    JavaScript 1 128 Updated Sep 27, 2016
  • Adapter for PMR web services.

    Python 1 Updated Sep 26, 2016
  • Illustrative web service for ATTED II coexpression web service

    Python 7 Updated Aug 31, 2016
  • ADAMA adapters for various Phytozome webservices

    1 Updated Aug 31, 2016
  • Visualizing tabix-indexed files located on the CyVerse Data Store using the JBrowse Genome Browser

    1 Updated Jul 28, 2016
  • Yeoman Generator for building Science Apps for the Arabidopsis Information Portal.

    JavaScript 2 2 Updated Jul 26, 2016
  • Araport demo science app that uses the ADAMA layer to query interaction data from EBI

    JavaScript Updated Jul 20, 2016
  • ADAMA adapters for querying EBI IntAct PSICQUIC data

    Python 1 Updated Jul 20, 2016
  • Tree visualization using TnT

    JavaScript 5 Updated Jul 15, 2016
  • JavaScript Updated Jul 13, 2016
  • Displays tables containing protein phosphorylation data from PhosPhAt.

    JavaScript Updated Jul 13, 2016
  • JavaScript Updated Jul 13, 2016
  • Araport demo science app that uses the ADAMA layer to query RT-qPCR expression data from JCVI

    JavaScript 3 Updated Jul 12, 2016
  • Hormone and Gene Regulatory Networks App.

    JavaScript Updated Jul 5, 2016
  • Araport BAR expression viewer app

    JavaScript Updated Jul 5, 2016
  • This app displays a table of the proteins in the ThaleMine database.

    JavaScript Updated Jul 5, 2016
  • Araport app to return gene information from ThaleMine.

    JavaScript 1 Updated Jul 5, 2016
  • JavaScript Updated Jul 5, 2016
  • Draw plots as described by PMR web services

    JavaScript Updated Jul 5, 2016
  • JavaScript 1 Updated Jun 30, 2016