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Plugin to allow the co-existence of the Hierarchical and Faceted Track Selectors in the GMOD JBrowse Genome Browser
ThaleMine - an InterMine with Arabidopsis genomic data
Data Sources for ThaleMine - an InterMine with Arabidopsis genomic data
All scripts that used to be in the main intermine repository in bio/scripts and intermine/scripts
Configuration and miscellaneous support files for Araport JBrowse installation
This is the code base for Thalemine, a data warehouse system based on InterMine and used in Araport, the Arabidopsis Information Portal.
ADAMA web-service wrapper to transform "Translated small ORFs" GFF3 data (Hsu et al. 2016) into JBrowse compatible JSON
Illustrative web service for ATTED II coexpression web service
Generates an NCBI .tbl file of annotations on a genome.
Custom JBrowse plugin to map JBrowse/Store/SeqFeature/REST to the Araport Adama API endpoints
JBrowse plugin enabling the ability to enrich the Ensembl Variants (VCF) track with metadata from rest.ensemblgenomes.org API
JBrowse plugin enabling the ability to enrich the 1001 Genomes Variants track with metadata from 1001genomes.org Master Accession List API
JBrowse plugin enabling the ability to dynamically load tracks from data/configurations stored in the Cyverse Data Store
Adaptible Data And Microservices API
ADAMA adapters for querying Araport11 annotation data
Docker image for the Araport portal.
Drupal module for the Araport Science Apps Workspace.
Drupal modules developed for Araport functionality.
Arabadopsis Information Portal Theme, a Bootstrap 3 theme based on http://drupal.org/project/bootstrap.
Viewer app for rendering phylogenetic trees.
Adapter for PMR web services.
ADAMA adapters for various Phytozome webservices
Visualizing tabix-indexed files located on the CyVerse Data Store using the JBrowse Genome Browser
Yeoman Generator for building Science Apps for the Arabidopsis Information Portal.
Araport demo science app that uses the ADAMA layer to query interaction data from EBI
ADAMA adapters for querying EBI IntAct PSICQUIC data