From abb6b85964c0ca760ee83f7e090d72d8aa47efba Mon Sep 17 00:00:00 2001 From: teutoburg Date: Tue, 19 Dec 2023 15:07:22 +0100 Subject: [PATCH 01/11] Migrate pyproject.toml to poetry --- pyproject.toml | 125 +++++++++++++++++++++++++------------------------ 1 file changed, 65 insertions(+), 60 deletions(-) diff --git a/pyproject.toml b/pyproject.toml index e8810515..11b73107 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,76 +1,78 @@ -[project] +[tool.poetry] name = "ScopeSim" version = "0.7.1" description = "Generalised telescope observation simulator" -readme = "README.md" -requires-python = ">=3.8" -license = {text = "License :: OSI Approved :: GNU General Public License v3 (GPLv3)"} -authors = [ - {name = "Kieran Leschinski", email="kieran.leschinski@unive.ac.at"}, -] +license = "GPL-3.0-or-later" +authors = ["Kieran Leschinski "] maintainers = [ - {name = "Kieran Leschinski", email="kieran.leschinski@unive.ac.at"}, - {name = "Hugo Buddelmeijer", email="hugo@buddelmeijer.nl"}, + "Kieran Leschinski ", + "Hugo Buddelmeijer ", + "Fabian Haberhauer ", ] -classifiers=[ - "Programming Language :: Python :: 3", - "License :: OSI Approved :: GNU General Public License v3 (GPLv3)", - "Operating System :: OS Independent", +readme = "README.md" +repository = "https://github.com/AstarVienna/ScopeSim" +documentation = "https://scopesim.readthedocs.io/en/latest/" +classifiers = [ "Intended Audience :: Science/Research", + "Operating System :: OS Independent", "Topic :: Scientific/Engineering :: Astronomy", ] -dependencies = [ - "numpy>=1.20.0", - "scipy>=1.10.0", - "astropy>=5.0", - "matplotlib>=3.7.2", - "pooch>=1.7.0", # for scipy.datasets - "docutils>=0.15", - "httpx>=0.23.0", - "beautifulsoup4>=4.4", - "lxml>=4.5.0", - "pyyaml>5.1", - "more-itertools>=9.0", - "tqdm>=4.66.1", +[tool.poetry.dependencies] +python = ">=3.8,<3.12" +numpy = "^1.24.4" +scipy = "^1.10.0" +astropy = "^5.2.2" +matplotlib = "^3.7.2" +pooch = "^1.7.0" - "synphot>=1.1.0", - "skycalc_ipy>=0.2.0", - 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include the tests module - yes it's hacky +skycalc_cli = "*" +ipykernel = "^6.24.0" -[project.urls] -"Homepage" = "https://scopesim.readthedocs.io/en/latest/" -"Source" = "https://github.com/AstarVienna/ScopeSim" -"Bug Reports" = "https://github.com/AstarVienna/ScopeSim/issues" +[tool.poetry.group.docs] +optional = true -[tool.setuptools.packages] -find = {} +[tool.poetry.group.docs.dependencies] +sphinx = "^5.3.0" +sphinx-rtd-theme = "^0.5.1" +jupyter-sphinx = "^0.2.3" +sphinxcontrib-apidoc = "^0.4.0" +nbsphinx = "^0.9.3" +numpydoc = "^1.6.0" +scopesim_templates = "^0.4.4" +ipykernel = "^6.24.0" + +[tool.poetry.urls] +"Bug Tracker" = "https://github.com/AstarVienna/ScopeSim/issues" + +[build-system] +requires = ["poetry-core"] +build-backend = "poetry.core.masonry.api" [tool.pytest.ini_options] addopts = "--strict-markers" @@ -97,3 +99,6 @@ filterwarnings = [ "ignore:The py23*:DeprecationWarning", "ignore:datetime.datetime.utcfromtimestamp()*:DeprecationWarning", ] + 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\"idna2008\""} + +[package.extras] +idna2008 = ["idna"] + [[package]] name = "scipy" version = "1.10.0" @@ -3268,4 +3340,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p [metadata] lock-version = "2.0" python-versions = ">=3.8,<3.12" -content-hash = "28770c32ad86eb479fcb2340ee4c250cba9df2901fab3ba225cc38587ef509dd" +content-hash = "27d4cc8d04ad783114de1c9a2e3b0d0b3ccfb5828fcf8c6b8e3715e98d4878cd" diff --git a/pyproject.toml b/pyproject.toml index 11b73107..df53e780 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -27,7 +27,7 @@ matplotlib = "^3.7.2" pooch = "^1.7.0" docutils = "^0.15" -httpx = "0.23.0" +httpx = "^0.23.0" beautifulsoup4 = "^4.12.1" lxml = "^4.9.3" pyyaml = "^6.0.0" From c3abf9161eb1c3e3efc73dadc592135f083aefb7 Mon Sep 17 00:00:00 2001 From: teutoburg Date: Tue, 19 Dec 2023 16:06:58 +0100 Subject: [PATCH 04/11] Increase scopesim templates version requirement --- poetry.lock | 37 ++++++++++++++++++++++--------------- pyproject.toml | 4 ++-- 2 files changed, 24 insertions(+), 17 deletions(-) diff --git a/poetry.lock b/poetry.lock index 1b466940..7628c3d9 100644 --- a/poetry.lock +++ b/poetry.lock @@ -2747,26 +2747,33 @@ test = ["asv", "gmpy2", "mpmath", "pooch", "pytest", "pytest-cov", "pytest-timeo [[package]] name = "scopesim-templates" -version = "0.4.4" +version = "0.5.0" description = "On-sky source templates for ScopeSim" optional = false -python-versions = "*" +python-versions = ">=3.8" files = [ - {file = "ScopeSim_Templates-0.4.4-py3-none-any.whl", hash = "sha256:0b94a915c81757ec99ef468ee67e2801b94aac0a083a47fb765c12bdde5a2cdb"}, - {file = "ScopeSim_Templates-0.4.4.tar.gz", hash = "sha256:f5caa3f42e72d3e7bb48dc1bbdeab67c7a3047d678940d4d9101bb26ad913c78"}, + {file = "ScopeSim_Templates-0.5.0-py3-none-any.whl", hash = "sha256:5b7f7e882e2ed60fe7b636ecb4b4201aaa5c115bf01561880bd502adf376ce62"}, + {file = "ScopeSim_Templates-0.5.0.tar.gz", hash = "sha256:ccef56687b510f139eaa5d352661594b6c0cd774024cc4e338450d2577c45b41"}, ] [package.dependencies] -astropy = ">1.1.2" -matplotlib = ">1.5.0" -numpy = ">=1.16" -pyckles = "*" -pyyaml = ">5" -requests = ">2.0" -scipy = ">0.17" -scopesim = "*" -spextra = "*" -synphot = ">0.1" +astropy = ">=5.0" +beautifulsoup4 = ">=4.4" +docutils = ">=0.15" +lxml = ">=4.5.0" +matplotlib = ">=3.2.0" +numpy = ">=1.19.5" +pyckles = ">=0.2" +pyyaml = ">=5.3" +scipy = ">=1.10.0" +scopesim = ">=0.7.0" +spextra = ">=0.33" +synphot = ">=1.1.0" + +[package.extras] +dev = ["jupyter", "jupytext"] +docs = ["jupyter-sphinx (==0.2.3)", "nbsphinx", "numpydoc", "sphinx (>=4.3.0)", "sphinx-rtd-theme (>=0.5.1)", "sphinxcontrib-apidoc"] +test = ["pytest", "pytest-cov", "skycalc-cli"] [[package]] name = "send2trash" @@ -3340,4 +3347,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p [metadata] lock-version = "2.0" python-versions = ">=3.8,<3.12" -content-hash = "27d4cc8d04ad783114de1c9a2e3b0d0b3ccfb5828fcf8c6b8e3715e98d4878cd" +content-hash = "555503abb21449a629a319ea3f8eb84622baec2ae549c692d56c501b6c4ada5c" diff --git a/pyproject.toml b/pyproject.toml index df53e780..36c085bc 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -49,7 +49,7 @@ ipykernel = "^6.24.0" [tool.poetry.group.test.dependencies] pytest = "^7.4.3" pytest-cov = "^4.1.0" -scopesim_templates = "^0.4.4" +scopesim_templates = "^0.5.0" # Just so that readthedocs doesn't include the tests module - yes it's hacky skycalc_cli = "*" ipykernel = "^6.24.0" @@ -64,7 +64,7 @@ jupyter-sphinx = "^0.2.3" sphinxcontrib-apidoc = "^0.4.0" nbsphinx = "^0.9.3" numpydoc = "^1.6.0" -scopesim_templates = "^0.4.4" +scopesim_templates = "^0.5.0" ipykernel = "^6.24.0" [tool.poetry.urls] From 05e2b9ed49120126f092f22f34c45386cac4050d Mon Sep 17 00:00:00 2001 From: teutoburg Date: Tue, 19 Dec 2023 16:14:42 +0100 Subject: [PATCH 05/11] Add effects section to auto release notes --- .github/release.yml | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/.github/release.yml b/.github/release.yml index 7912e84e..cd258672 100644 --- a/.github/release.yml +++ b/.github/release.yml @@ -6,6 +6,9 @@ changelog: - title: API Changes labels: - API + - title: Changes to or addition of Effects + labels: + - effects - title: New Features or Improvements labels: - enhancement @@ -18,4 +21,3 @@ changelog: - title: Other Changes labels: - "*" - From b396c4eaed4cc65ed962d06e76a674b5ffbb2627 Mon Sep 17 00:00:00 2001 From: teutoburg Date: Tue, 19 Dec 2023 16:15:24 +0100 Subject: [PATCH 06/11] Use poetry-based CI, remove reference to obsolete dev_spectroscopy branch --- .github/workflows/tests.yml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/tests.yml b/.github/workflows/tests.yml index 635a53b1..1fe9ae0d 100644 --- a/.github/workflows/tests.yml +++ b/.github/workflows/tests.yml @@ -5,12 +5,10 @@ on: branches: - master - dev_master - - dev_spectroscopy pull_request: branches: - master - dev_master - - dev_spectroscopy schedule: - # Run every day at 5:00 UTC - cron: "0 5 * * *" @@ -20,4 +18,6 @@ on: jobs: call-tests: - uses: AstarVienna/DevOps/.github/workflows/tests.yml@master + name: Call tests + uses: AstarVienna/DevOps/.github/workflows/tests.yml@poetry + secrets: inherit From ff24f5e5e1faa64707c6cdde06585138b1e14c62 Mon Sep 17 00:00:00 2001 From: teutoburg Date: Tue, 19 Dec 2023 16:15:57 +0100 Subject: [PATCH 07/11] Remove call to minimumdependencies for now --- .github/workflows/minimumdependencies.yml | 27 ----------------------- 1 file changed, 27 deletions(-) delete mode 100644 .github/workflows/minimumdependencies.yml diff --git a/.github/workflows/minimumdependencies.yml b/.github/workflows/minimumdependencies.yml deleted file mode 100644 index 70ea4405..00000000 --- a/.github/workflows/minimumdependencies.yml +++ /dev/null @@ -1,27 +0,0 @@ -name: Minimum Dependencies -# Installs the minimum versions of the dependencies and runs the tests. -# This test will lower the chance that users botch their installation by -# only upgrading this project but not the dependencies. - -on: - push: - branches: - - master - - dev_master - - dev_spectroscopy - pull_request: - branches: - - master - - dev_master - - dev_spectroscopy - - # Allows you to run this workflow manually from the Actions tab. - workflow_dispatch: - - schedule: - - # Run every day at 5:00 UTC. - - cron: "0 5 * * *" - -jobs: - call-minimum-dependencies: - uses: AstarVienna/DevOps/.github/workflows/minimumdependencies.yml@master From 2832ee82199279af4d4c0da4813cc530f5df255a Mon Sep 17 00:00:00 2001 From: teutoburg Date: Tue, 19 Dec 2023 16:18:00 +0100 Subject: [PATCH 08/11] Bump version to 0.8.0a0 --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index 36c085bc..18196b3d 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "ScopeSim" -version = "0.7.1" +version = "0.8.0a0" description = "Generalised telescope observation simulator" license = "GPL-3.0-or-later" authors = ["Kieran Leschinski "] From db2fe8539a866027530de66650d6faed6b510443 Mon Sep 17 00:00:00 2001 From: teutoburg Date: Tue, 19 Dec 2023 16:38:28 +0100 Subject: [PATCH 09/11] Increase docutils version requirement to avoid deprecation warning --- poetry.lock | 11 +++++------ pyproject.toml | 2 +- 2 files changed, 6 insertions(+), 7 deletions(-) diff --git a/poetry.lock b/poetry.lock index 7628c3d9..73eebcf7 100644 --- a/poetry.lock +++ b/poetry.lock @@ -679,14 +679,13 @@ files = [ [[package]] name = "docutils" -version = "0.15" +version = "0.18" description = "Docutils -- Python Documentation Utilities" optional = false -python-versions = ">=2.6,<3.0 || >=3.3.dev0" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" files = [ - {file = "docutils-0.15-py3-none-any.whl", hash = "sha256:d2ddba74835cb090a1b627d3de4e7835c628d07ee461f7b4480f51af2fe4d448"}, - {file = "docutils-0.15.post1-py2-none-any.whl", hash = "sha256:ba4584f9107571ced0d2c7f56a5499c696215ba90797849c92d395979da68521"}, - {file = "docutils-0.15.tar.gz", hash = "sha256:54a349c622ff31c91cbec43b0b512f113b5b24daf00e2ea530bb1bd9aac14849"}, + {file = "docutils-0.18-py2.py3-none-any.whl", hash = "sha256:a31688b2ea858517fa54293e5d5df06fbb875fb1f7e4c64529271b77781ca8fc"}, + {file = "docutils-0.18.tar.gz", hash = "sha256:c1d5dab2b11d16397406a282e53953fe495a46d69ae329f55aa98a5c4e3c5fbb"}, ] [[package]] @@ -3347,4 +3346,4 @@ testing = ["big-O", "jaraco.functools", "jaraco.itertools", "more-itertools", "p [metadata] lock-version = "2.0" python-versions = ">=3.8,<3.12" -content-hash = "555503abb21449a629a319ea3f8eb84622baec2ae549c692d56c501b6c4ada5c" +content-hash = "3ab0ec509f4c8c120775ca502ce187e3e9c288bff31304c0fee8e7f139e2d325" diff --git a/pyproject.toml b/pyproject.toml index 18196b3d..c212ad08 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -26,7 +26,7 @@ astropy = "^5.2.2" matplotlib = "^3.7.2" pooch = "^1.7.0" -docutils = "^0.15" +docutils = "0.18" httpx = "^0.23.0" beautifulsoup4 = "^4.12.1" lxml = "^4.9.3" From 08c06101ae6140c78f7c7c64f1f0bc0763b09cd6 Mon Sep 17 00:00:00 2001 From: teutoburg Date: Tue, 19 Dec 2023 18:57:33 +0100 Subject: [PATCH 10/11] Exclude docs from codecov --- pyproject.toml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pyproject.toml b/pyproject.toml index c212ad08..d8e6118b 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -101,4 +101,4 @@ filterwarnings = [ ] [tool.coverage.report] -omit = ["scopesim/tests/*"] +omit = ["scopesim/tests/*", "docs/*"] From f403b4bc4344cb64e2d3a1b57dc7f7b707f3de38 Mon Sep 17 00:00:00 2001 From: teutoburg Date: Wed, 20 Dec 2023 00:34:00 +0100 Subject: [PATCH 11/11] Use poetry for RTD --- .readthedocs.yaml | 22 +++++++++++++--------- 1 file changed, 13 insertions(+), 9 deletions(-) diff --git a/.readthedocs.yaml b/.readthedocs.yaml index c92119a5..7f5ebf3f 100644 --- a/.readthedocs.yaml +++ b/.readthedocs.yaml @@ -5,19 +5,23 @@ version: 2 build: - os: ubuntu-20.04 + os: "ubuntu-22.04" tools: - python: "3.9" + python: "3.11" + jobs: + post_create_environment: + # Install poetry + # https://python-poetry.org/docs/#installing-manually + - pip install poetry + # Tell poetry to not use a virtual environment + - poetry config virtualenvs.create false + post_install: + # Install dependencies with 'docs' dependency group + # https://python-poetry.org/docs/managing-dependencies/#dependency-groups + - poetry install --with docs sphinx: configuration: docs/source/conf.py -python: - install: - - method: pip - path: . - extra_requirements: - - docs - # If using Sphinx, optionally build your docs in additional formats such as PDF # formats: [] # ignore htmlzip. html is always run