No description, website, or topics provided.
Switch branches/tags
Nothing to show
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.

README.md

PreDDI

Data sources

PMID Title Scoring
22647690 Drug-drug interaction through molecular structure similarity analysis Tanimoto coefficient
23520498 Detection of Drug-Drug Interactions by Modeling Interaction Profile Fingerprints Tanimoto coefficient
24158091 Mining clinical text for signals of adverse drug-drug interactions population event rate
26196247 Label Propagation Prediction of Drug-Drug Interactions Based on Clinical Side Effects Tanimoto coefficient
27354693 A probabilistic approach for collective similarity-based drug–drug interaction prediction -
28056782 Predicting potential drug-drug interactions by integrating chemical, biological, phenotypic and network data -

Pipeline

  1. Download from DrugBank and extract under data/DrugBank/:
    1.1. drugbank_all_full_database.xml.zip to full database.xml
    1.2. drugbank_all_drug_links.csv.zip to drug links.csv
  2. Run main.py

Statistics

Mapping of source data to DrugBank IDs

PMID Matched Duplicated Unmatched
22647690 8367 8385 344
23520498 3820 13286 130
24158091 4885 1098 0
26196247 118614 6861 19593
27354693 1989 1989 0
28056782 1000 0 0