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Elasticsearch Neural Indexing for TREC-COVID

Requirements

TBA

How to run

  1. Run es.py to index corpus, ensure paths are correct, or correct them flags (see python3 es.py -h)
  2. Run query.py to generate TREC-formatted results (see python3 query.py -h)

Models

ClinicalCovidBERT [https://huggingface.co/manueltonneau/clinicalcovid-bert-nli]

BioBERT STS [https://huggingface.co/clagator/biobert_v1.1_pubmed_nli_sts]

BioBERT msmarco [https://huggingface.co/nboost/pt-biobert-base-msmarco]

CovidBERT [https://huggingface.co/gsarti/covidbert-nli]