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process {
withName:fastqc_1_2 {
cpus = 2
memory = '4GB'
}
withName:trimmomatic_1_2 {
cpus = 2
memory = { 4.GB * task.attempt }
}
withName:filter_poly_1_3 {
cpus = 1
memory = { 4.GB * task.attempt }
}
withName:bowtie_1_4 {
memory = {5.Gb*task.attempt}
cpus = 4
}
withName:bowtie_build_1_4 {
memory = {5.Gb*task.attempt}
cpus = 1
}
withName:retrieve_mapped_1_5 {
memory = {5.Gb*task.attempt}
cpus = 2
}
withName:va_spades_1_7 {
cpus = 4
memory = { 5.GB * task.attempt }
scratch = true
}
withName:va_megahit_1_7 {
cpus = 4
memory = { 5.GB * task.attempt }
scratch = true
}
withName:assembly_mapping_1_8 {
cpus = 4
memory = { 5.GB * task.attempt }
}
withName:process_assembly_mapping_1_8 {
cpus = 1
memory = { 5.GB * task.attempt }
}
withName:pilon_1_9 {
cpus = 4
memory = { 7.GB * task.attempt }
}
withName:pilon_report_1_9 {
cpus = 1
memory = { 7.GB * task.attempt }
}
withName:split_assembly_1_10 {
cpus = 1
memory = { 1.GB * task.attempt }
}
withName:dengue_typing_assembly_1_11 {
cpus = 4
memory = '1GB'
}
withName:dengue_typing_reads_1_11 {
cpus = 4
memory = { 5.GB * task.attempt }
}
withName:mafft_1_12 {
cpus = 4
memory = { 4.GB * task.attempt }
}
withName:raxml_1_13 {
cpus = 4
memory = { 4.GB * task.attempt }
}
}
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