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@cimendes cimendes released this Oct 17, 2019 · 1 commit to master since this release

Major changes:

  • Update Mapping and Typing DB to v3 to include mosquito-derived DENV sequences
  • Added support for single-end short sequencing data in addition to paired-end data
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@cimendes cimendes released this Jul 2, 2019 · 26 commits to master since this release

New updated version of DEN-IM!

Biggest chenges include:

  • Option to add 4 NCBI strains (one for each serotype) in the phylogenetic inference analysis
  • Option to add the closest reference in the typing database to the phylogenetic inference analysis
  • module to check the expected coverage of the DENV genome (with a minimum requirement check)
  • lots and lots of tweaks and fixes
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@cimendes cimendes released this Dec 11, 2018 · 51 commits to master since this release

First official release of DEN-IM!

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