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Branch: master
Commits on May 29, 2019
  1. Merge pull request #19 from B-UMMI/jacarrico-patch-1

    cimendes committed May 29, 2019
    Correct PATH version of BLAST from 2.8 to 2.7
Commits on Mar 18, 2019
  1. Get absolute path of Blast DB

    miguelpmachado committed Mar 18, 2019
    Go back to Blast v2.7.1 to avoid sequences headers size limitation
Commits on Jan 16, 2019
  1. Clean code

    miguelpmachado committed Jan 16, 2019
  2. v2.2

    miguelpmachado committed Jan 16, 2019
    Add the possibility to create a Bowtie2 index (*seq_typing.py index* module) before running *seq_typing.py reads* module (useful when running the same reference sequences files to different reads dataset)
    Change Blast version in Docker image to 2.8.1
Commits on Dec 4, 2018
  1. Merge pull request #16 from B-UMMI/miguelpmachado-patch-1

    cimendes committed Dec 4, 2018
    Update README Docker tag
  2. Merge pull request #15 from B-UMMI/miguelpmachado-patch-1

    cimendes committed Dec 4, 2018
    Fix missing python2
  3. Fix missing python2

    miguelpmachado committed Dec 4, 2018
Commits on Nov 27, 2018
  1. Merge pull request #14 from B-UMMI/docker_image

    cimendes committed Nov 27, 2018
    Add Dockerfile
  2. Add Dockerfile

    miguelpmachado committed Nov 27, 2018
  3. Merge pull request #13 from B-UMMI/miguelpmachado-patch-2

    cimendes committed Nov 27, 2018
     Combine stx2a, stx2c and stx2d into stx2acd
  4. Correct import utils

    miguelpmachado committed Nov 27, 2018
  5. Correct import utils

    miguelpmachado committed Nov 27, 2018
  6. Combine stx2a, stx2c and stx2d into stx2acd

    miguelpmachado committed Nov 27, 2018
    Update stx sequences
Commits on Oct 24, 2018
  1. Merge pull request #12 from B-UMMI/miguelpmachado-patch-2

    cimendes committed Oct 24, 2018
    Installation
  2. Add note for user installation

    miguelpmachado committed Oct 24, 2018
    Solve package_data recursive
Commits on Oct 23, 2018
  1. Fix bug

    miguelpmachado committed Oct 23, 2018
Commits on Oct 22, 2018
  1. Merge pull request #10 from B-UMMI/rematch_python3

    cimendes committed Oct 22, 2018
    ReMatCh to Python v3
  2. setup.py

    miguelpmachado committed Oct 22, 2018
  3. Merge remote-tracking branch 'origin/rematch_python3' into rematch_py…

    miguelpmachado committed Oct 22, 2018
    …thon3
    
    # Conflicts:
    #	setup.py
  4. setup.py

    miguelpmachado committed Oct 22, 2018
  5. executable

    miguelpmachado committed Oct 22, 2018
Commits on Oct 20, 2018
  1. setup.py

    miguelpmachado committed Oct 20, 2018
Commits on Oct 19, 2018
  1. ReMatCh to Python3

    miguelpmachado committed Oct 19, 2018
Commits on Oct 18, 2018
  1. ReMatCh to Python3

    miguelpmachado committed Oct 18, 2018
Commits on Oct 15, 2018
  1. ReMatCh to Python3

    miguelpmachado committed Oct 15, 2018
Commits on Sep 25, 2018
  1. Merge pull request #9 from B-UMMI/miguelpmachado-patch-1

    cimendes committed Sep 25, 2018
    Update README
  2. Update README

    miguelpmachado committed Sep 25, 2018
  3. Merge pull request #8 from B-UMMI/assemblies

    cimendes committed Sep 25, 2018
    2.0 Assemblies
  4. Extend the rational

    miguelpmachado committed Sep 25, 2018
  5. make executable

    miguelpmachado committed Sep 25, 2018
  6. Update README.md

    miguelpmachado committed Sep 25, 2018
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