A Toolkit for analyzing next-generation DNA Re-Sequencing data
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README.md

Reseqtools

A Toolkit for analyzing next-generation DNA Re-Sequencing data


If you have any question ,contact the email: hewm2008@gmail.com / hewm2008@qq.com and also join the QQ Group : 125293663 we will send you the newest Reseqtools (iTools_CodeXX.tar.gz) for you iTools_Code20141231.tar.gz

Function Introduce

iTools has 10 module, every module is the tool for dealing with specific format files. Here we main list 9  the most important modules:
1 Fatools                  main deals with Fasta format;
2 FqTools                  main deals with Fastq format;
3 SOAPtools                deals with SOAP format which is the result of SOAP[3].
4 CNSTools                 deals with cns format which is the result of soapsnp[4].
5 XamTools                 deals with sam/bam format which is the result of bwa[5]
6 Gfftools                 deals with gff format which is the genome annotation file.
7 Formatools               is the converter of some Custom format file.
8 Gametools                is the package for some classics games
9 Filetools                 is the tools for file with fixed format 
10 Vartools                 Tools For SOAP Variant
11 Othrtools                LDDecay etc
>Users also can comprehensive understand of function by get the readme/ppt

==========
重测序分析集成工具包 linux 64位平台 静态编译 chmod 便可以直接运行了 (ReSeqTools/iTools)
即在linux64机上只须 tar -zxvf ReSeqTools_XXX.tar.gz ; cd iTools_Code; chmod 775 iTools ; ./ iTools -h ; 无须重新make
QQ交流群 群名称是Reseqtools QQ群号: 125293663


硕士毕业文章Thesis Disseration Paper (Master):
http://cdmd.cnki.com.cn/Article/CDMD-10561-1013318279.htm
或者进入中国知网 http://www.cnki.net/ 搜: 基于重测序数据的群体SNP位点检测及基因型判断


小文章见这儿: http://www.geneticsmr.com//year2013/vol12-4/pdf/gmr3109.pdf


The paper (title: ReSeqTools: an integrated toolkit for large-scale next-generation sequencing based resequencing analysis )is here: http://www.geneticsmr.com//year2013/vol12-4/pdf/gmr3109.pdf


Communication & Discussion QQ Group: 125293663 If you have any question ,contact the email: hewm2008@gmail.com/hewm2008@qq.com and also join the QQ Group : 125293663


重测序软件工具包 Fasta Fastq SOAP Sam Bam Gff CNS

Discussing

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