Web application for locally optimized, nucleotide to nucleotide pairwise alignments of RNA 3D structures
HTML PHP JavaScript CSS Perl Matlab Other
Switch branches/tags
Nothing to show
Clone or download
Fetching latest commit…
Cannot retrieve the latest commit at this time.
Permalink
Failed to load latest commit information.
R3DAlign @ 679b3ad
application
css
data/results
jmol Add jmol 12.0 Nov 21, 2012
js
matlab
queue
system
user_guide
.gitignore
.gitmodules
Readme.md
index.php
license.txt
mlab.sh

Readme.md

##Installation

git clone
# update R3DAlign submodule
git submodule init
git submodule update
cd R3DAlign
# update FR3D submodule
git submodule init
git submodule update

##Configuration

  • CodeIgniter main config

      cp application/config/config_template.php application/config/config.php
      edit application/config/config.php
    
  • Email helper configuration

      cp application/config/email_template.php application/config/email.php
      edit application/config/email.php
    
  • Database connection

      cp application/config/database_template.php application/config/database.php
      edit application/config/database.php
    
  • Server-specific paths

      cp application/config/r3dalign_template.php application/config/r3dalign.php
      edit application/config/r3dalign.php
    
  • Queue management

      cp queue/r3dalign_queue_config_template.pl queue/r3dalign_queue_config.pl
      edit queue/r3dalign_queue_config.pl
    
  • Matlab

      cp matlab/importConfigTemplate.m matlab/importConfig.m
      edit matlab/importConfig.m
    

##Credits The main computations are performed by R3DAlign and FR3D. This project also uses: