Web application for locally optimized, nucleotide to nucleotide pairwise alignments of RNA 3D structures
HTML PHP JavaScript CSS Perl Matlab Other
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R3DAlign @ 679b3ad
application
css
data/results
jmol
js
matlab
queue
system
user_guide
.gitignore
.gitmodules
Readme.md
index.php
license.txt
mlab.sh

Readme.md

Installation

git clone
# update R3DAlign submodule
git submodule init
git submodule update
cd R3DAlign
# update FR3D submodule
git submodule init
git submodule update

Configuration

  • CodeIgniter main config

    cp application/config/config_template.php application/config/config.php
    edit application/config/config.php
    
  • Email helper configuration

    cp application/config/email_template.php application/config/email.php
    edit application/config/email.php
    
  • Database connection

    cp application/config/database_template.php application/config/database.php
    edit application/config/database.php
    
  • Server-specific paths

    cp application/config/r3dalign_template.php application/config/r3dalign.php
    edit application/config/r3dalign.php
    
  • Queue management

    cp queue/r3dalign_queue_config_template.pl queue/r3dalign_queue_config.pl
    edit queue/r3dalign_queue_config.pl
    
  • Matlab

    cp matlab/importConfigTemplate.m matlab/importConfig.m
    edit matlab/importConfig.m
    

Credits

The main computations are performed by R3DAlign and FR3D. This project also uses: