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Readme.md

##Installation

git clone
# update R3DAlign submodule
git submodule init
git submodule update
cd R3DAlign
# update FR3D submodule
git submodule init
git submodule update

##Configuration

  • CodeIgniter main config

      cp application/config/config_template.php application/config/config.php
      edit application/config/config.php
    
  • Email helper configuration

      cp application/config/email_template.php application/config/email.php
      edit application/config/email.php
    
  • Database connection

      cp application/config/database_template.php application/config/database.php
      edit application/config/database.php
    
  • Server-specific paths

      cp application/config/r3dalign_template.php application/config/r3dalign.php
      edit application/config/r3dalign.php
    
  • Queue management

      cp queue/r3dalign_queue_config_template.pl queue/r3dalign_queue_config.pl
      edit queue/r3dalign_queue_config.pl
    
  • Matlab

      cp matlab/importConfigTemplate.m matlab/importConfig.m
      edit matlab/importConfig.m
    

##Credits The main computations are performed by R3DAlign and FR3D. This project also uses:

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Web application for locally optimized, nucleotide to nucleotide pairwise alignments of RNA 3D structures

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