BIDS Apps
Pinned repositories
Repositories
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MRtrix3_connectome
Generate subject connectomes from raw image data and perform inter-subject connection density normalisation, using tools provided in the MRtrix3 software package.
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freesurfer
recon-all from FreeSurfer
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HCPPipelines
A BIDS App for minimal preprocessing using the HCP Pipelines
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matlab-compiler-runtime
Base image with Matlab Compiler Runtime (MCR)
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CPAC
BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)
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aa
BIDS App containing an instance of the Automatic Analysis
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antsCorticalThickness
BIDS App for calculating cortical thickness using ANTs
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ndmg
BIDS app for NeuroData's MRI to Graphs pipeline
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mriqc
This repository has moved to https://github.com/poldracklab/mriqc
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fmriprep
This repository has moved to https://github.com/poldracklab/fmriprep
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DPARSF
Docker version of DPARSF, also deployed at OpenNeuro.org
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niak
Pipeline for preprocessing of fMRI and structural MRI scans http://niak.simexp-lab.org/
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brainiak-srm
This is the BIDS-app version of the Shared Response Model (SRM) of BrainIAK
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randomise
Group level random effects analysis using FSLs randomise