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A collection of containerized neuroimaging workflows and pipelines that accept datasets organized according to the Brain Imaging Data Structure (BIDS).

👋 Welcome to the BIDS Apps github organization 👋

Click the following link if you want to view the BIDS Apps website.

If you want to learn more about BIDS in general, have a look at the bids-standard GitHub organization.

For generic BIDS related question use the NeuroStars Discourse Forum, under the bids tag.

Otherwise feel free to open an issue on any of those repositories if you have specific questions or requests

As a reminder, all contributors have to adhere to our Code of Conduct.


  1. dockerfile-templates dockerfile-templates Public

    Dockerfile templates commonly used in BIDS Apps

    Dockerfile 9 7

  2. example example Public template

    This an example app that can serve as a template.

    Python 16 31

  3. Public

    Portable neuroimaging pipelines that understand BIDS datasets

    CSS 3 16

  4. maintenance-tools maintenance-tools Public



Showing 10 of 41 repositories

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