BIDS Apps

Generate subject connectomes from raw image data and perform inter-subject connection density normalisation, using tools provided in the *MRtrix3* software package.

This an example app that can serve as a template.

BIDS App containing an instance of the SPM software.

Resting state HRF estimation from BOLD-fMRI signal

BIDS App containing an instance of the Automatic Analysis

recon-all from FreeSurfer

BIDS Application for the Configurable Pipeline for the Analysis of Connectomes (C-PAC)

BIDS App for calculating cortical thickness using ANTs

BIDS app for NeuroData's MRI to Graphs pipeline

This repository has moved to https://github.com/poldracklab/mriqc

This repository has moved to https://github.com/poldracklab/fmriprep

Docker version of DPARSF, also deployed at OpenNeuro.org

Pipeline for preprocessing of fMRI and structural MRI scans http://niak.simexp-lab.org/

Base image with Matlab Compiler Runtime (MCR)

This is the BIDS-app version of the Shared Response Model (SRM) of BrainIAK

Group level random effects analysis using FSLs randomise

BIDS App for BROCCOLI