dwipreproc dwipreproc_in.mif dwi_preprocessed.mif -rpe_header -se_epi se_epi.mif -align_seepi -eddyqc_text eddyqc/ dwipreproc: dwipreproc: Note that this script makes use of commands / algorithms that have relevant articles for citation; INCLUDING FROM EXTERNAL SOFTWARE PACKAGES. Please consult the help page (-help option) for more information. dwipreproc: dwipreproc: Loading header for image file '/outputs/mrtrix3_connectome.py-tmp-66V2PK/dwipreproc_in.mif' dwipreproc: Generated temporary directory: /outputs/mrtrix3_connectome.py-tmp-66V2PK/dwipreproc-tmp-1U6EOS/ Command: mrconvert /outputs/mrtrix3_connectome.py-tmp-66V2PK/dwipreproc_in.mif /outputs/mrtrix3_connectome.py-tmp-66V2PK/dwipreproc-tmp-1U6EOS/dwi.mif mrconvert: [ 0%] copying from "/outputs/m...mp-66V2PK/dwipreproc_in.mif" to "/outputs/m...ipreproc-tmp-1U6EOS/dwi.mif"...  mrconvert: [ 1%] copying from "/outputs/m...mp-66V2PK/dwipreproc_in.mif" to "/outputs/m...ipreproc-tmp-1U6EOS/dwi.mif"...  mrconvert: [ 2%] copying from "/outputs/m...mp-66V2PK/dwipreproc_in.mif" to "/outputs/m...ipreproc-tmp-1U6EOS/dwi.mif"...  mrconvert: [ 3%] copying from "/outputs/m...mp-66V2PK/dwipreproc_in.mif" to "/outputs/m...ipreproc-tmp-1U6EOS/dwi.mif"...  mrconvert: [ 4%] copying from 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"/outputs/m...me.py-tmp-66V2PK/se_epi.mif" to "/outputs/m...eproc-tmp-1U6EOS/se_epi.mif"...  mrconvert: [100%] copying from "/outputs/m...me.py-tmp-66V2PK/se_epi.mif" to "/outputs/m...eproc-tmp-1U6EOS/se_epi.mif" dwipreproc: Changing to temporary directory (/outputs/mrtrix3_connectome.py-tmp-66V2PK/dwipreproc-tmp-1U6EOS/) dwipreproc: Loading header for image file 'dwi.mif' dwipreproc: Loading header for image file 'se_epi.mif' dwipreproc: [ERROR] No diffusion gradient table found dwipreproc: Changing back to original directory (/outputs/mrtrix3_connectome.py-tmp-66V2PK) dwipreproc: Contents of temporary directory kept, location: /outputs/mrtrix3_connectome.py-tmp-66V2PK/dwipreproc-tmp-1U6EOS/