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#!/usr/bin/env python3
import argparse
parser = argparse.ArgumentParser(description='BIDS App entrypoint script '
'to extract time-series from resting-state.')
parser.add_argument('bids_dir', help='The directory with the input dataset '
'formatted according to the BIDS standard.')
parser.add_argument('output_dir', help='The directory where the output files '
'should be stored. If you are running group level analysis '
'this folder should be prepopulated with the results of the'
'participant level analysis.')
parser.add_argument('analysis_level', help='Level of the analysis that will be performed. '
'Multiple participant level analyses can be run independently '
'(in parallel) using the same output_dir.',
choices=['participant', 'group'])
parser.add_argument('--participant_label', help='The label(s) of the participant(s) that should be analyzed. The label '
'corresponds to sub-<participant_label> from the BIDS spec '
'(so it does not include "sub-"). If this parameter is not '
'provided all subjects should be analyzed. Multiple '
'participants can be specified with a space separated list.',
nargs="+")
args = parser.parse_args()
from main import main
main(args)