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Snakemake pipeline for processing single-cell combinatorial indexing ATAC seq data
An R package for annotation of circular RNAs
bisulfite sequencing pipeline from fastq to methylation reports
Pipelines in genomics
Packages for GNU Guix that have not yet or will not be submitted upstream for various reasons
Pipeline for analysis of Dropseq single cell data
netSmooth: A Network smoothing based method for Single Cell RNA-seq
GNU Guix package definitions for proprietary software, or software with unclear licenses.
Pipeline for RNAseq
A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data
Web interface for RCAS
teaching material for compgen2018 course
website for the platform
Documentation for PiGx
Copy of Guix with additional experimental reproducibility patches.
Deep Seq experiments backup workflow
R package for the RNA Centric Annotation System (RCAS)
Galaxy wrapper for EpiCSeg - a tool for conducting chromatin segmentation.
Repository for Single Cell Analysis Course in MDC
R package for genomic feature analysis and visualization
Chromatin segmentation in R
R package to fit multivariate discrete probability distributions to count data
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
Conda recipes for the bioconda channel.
The code that drives https://hpcguix.op.umcutrecht.nl.
doRiNa - database of posttranscriptional regulatory elements