@BIMSBbioinfo

BIMSB bioinformatics platform

git repositories for the platform

  • bisulfite sequencing pipeline from fastq to methylation reports

    Python 1 GPL-3.0 Updated Jul 16, 2018
  • Snakemake pipeline for processing single-cell combinatorial indexing ATAC seq data

    Python Updated Jul 16, 2018
  • An R package for annotation of circular RNAs

    R 4 5 2 issues need help Updated Jul 6, 2018
  • Python 2 3 Updated Jul 6, 2018
  • Pipelines in genomics

    Python 1 1 GPL-3.0 Updated Jul 5, 2018
  • Packages for GNU Guix that have not yet or will not be submitted upstream for various reasons

    Scheme 6 2 GPL-3.0 Updated Jul 4, 2018
  • Pipeline for analysis of Dropseq single cell data

    Python 2 2 Updated Jul 4, 2018
  • netSmooth: A Network smoothing based method for Single Cell RNA-seq

    R 8 Updated Jul 3, 2018
  • GNU Guix package definitions for proprietary software, or software with unclear licenses.

    Scheme GPL-3.0 Updated Jul 3, 2018
  • Pipeline for RNAseq

    Shell 5 3 GPL-3.0 Updated Jul 2, 2018
  • A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data

    R Updated Jun 20, 2018
  • Web interface for RCAS

    JavaScript AGPL-3.0 Updated Jun 8, 2018
  • 🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using lightweight alignments

    C++ 1 67 GPL-3.0 Updated May 29, 2018
  • teaching material for compgen2018 course

    HTML 7 1 Updated May 28, 2018
  • website for the platform

    HTML 1 8 Updated May 19, 2018
  • R 1 Updated May 7, 2018
  • Documentation for PiGx

    Updated Apr 21, 2018
  • Copy of Guix with additional experimental reproducibility patches.

    Scheme GPL-3.0 Updated Apr 9, 2018
  • Deep Seq experiments backup workflow

    Ruby MIT Updated Apr 3, 2018
  • R package for the RNA Centric Annotation System (RCAS)

    R 1 1 Updated Mar 26, 2018
  • Galaxy wrapper for EpiCSeg - a tool for conducting chromatin segmentation.

    HTML Updated Mar 1, 2018
  • Repository for Single Cell Analysis Course in MDC

    HTML 3 1 Updated Feb 20, 2018
  • R package for genomic feature analysis and visualization

    HTML 38 17 Updated Feb 1, 2018
  • Chromatin segmentation in R

    HTML 11 Updated Jan 31, 2018
  • R package to fit multivariate discrete probability distributions to count data

    C++ 4 Updated Jan 25, 2018
  • A place to submit conda recipes before they become fully fledged conda-forge feedstocks

    Python 899 BSD-3-Clause Updated Jan 24, 2018
  • Conda recipes for the bioconda channel.

    Shell 727 Updated Jan 23, 2018
  • 1 Updated Jan 18, 2018
  • The code that drives https://hpcguix.op.umcutrecht.nl.

    JavaScript 2 AGPL-3.0 Updated Oct 22, 2017
  • doRiNa - database of posttranscriptional regulatory elements

    Python 1 GPL-3.0 Updated Oct 16, 2017