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BUG: Need to have image type specified as FL for FLAIR

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1 parent b120402 commit 0bf079de09d76ae2cfdf9f93624823290a725959 @hjmjohnson hjmjohnson committed Mar 4, 2017
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32 BRAINSABC/TestSuite/BRAINSABCSmallExtendedAtlasDefinition.xml.in
@@ -12,7 +12,7 @@
<filename>@BRAINSTools_BINARY_DIR@/ExternalData/template_t2_denoised_gaussian.nii.gz</filename>
</AtlasImage>
<AtlasImage>
- <type>FLAIR</type>
+ <type>FL</type>
<filename>@BRAINSTools_BINARY_DIR@/ExternalData/template_t2_denoised_gaussian.nii.gz</filename>
</AtlasImage>
<AtlasImage>
@@ -49,7 +49,7 @@
<upper>0.70</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.01</lower>
<upper>0.99</upper>
</bounds>
@@ -83,7 +83,7 @@
<upper>0.98</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.01</lower>
<upper>0.99</upper>
</bounds>
@@ -118,7 +118,7 @@
<upper>0.98</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.01</lower>
<upper>0.99</upper>
</bounds>
@@ -152,7 +152,7 @@
<upper>0.98</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.01</lower>
<upper>0.99</upper>
</bounds>
@@ -186,7 +186,7 @@
<upper>0.98</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.01</lower>
<upper>0.99</upper>
</bounds>
@@ -220,7 +220,7 @@
<upper>0.98</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.01</lower>
<upper>0.99</upper>
</bounds>
@@ -255,7 +255,7 @@
<upper>0.99</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.01</lower>
<upper>0.99</upper>
</bounds>
@@ -289,7 +289,7 @@
<upper>0.99</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.01</lower>
<upper>0.99</upper>
</bounds>
@@ -323,7 +323,7 @@
<upper>1.0</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.0</lower>
<upper>0.5</upper>
</bounds>
@@ -357,7 +357,7 @@
<upper>0.5</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.0</lower>
<upper>0.9</upper>
</bounds>
@@ -391,7 +391,7 @@
<upper>0.5</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.0</lower>
<upper>0.5</upper>
</bounds>
@@ -425,7 +425,7 @@
<upper>1.0</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.1</lower>
<upper>0.99</upper>
</bounds>
@@ -459,7 +459,7 @@
<upper>1.0</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.01</lower>
<upper>0.99</upper>
</bounds>
@@ -493,7 +493,7 @@
<upper>0.3</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.0</lower>
<upper>0.5</upper>
</bounds>
@@ -527,7 +527,7 @@
<upper>0.1</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.0</lower>
<upper>0.10</upper>
</bounds>
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32 ReferenceAtlas/ExtendedAtlasDefinition.xml.in
@@ -12,7 +12,7 @@
<filename>@ATLAS_INSTALL_DIRECTORY@/template_t2_denoised_gaussian.nii.gz</filename>
</AtlasImage>
<AtlasImage>
- <type>FLAIR</type>
+ <type>FL</type>
<filename>@ATLAS_INSTALL_DIRECTORY@/template_t2_denoised_gaussian.nii.gz</filename>
</AtlasImage>
<AtlasImage>
@@ -49,7 +49,7 @@
<upper>0.98</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.01</lower>
<upper>0.99</upper>
</bounds>
@@ -83,7 +83,7 @@
<upper>0.99</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.01</lower>
<upper>0.99</upper>
</bounds>
@@ -118,7 +118,7 @@
<upper>0.99</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.01</lower>
<upper>0.99</upper>
</bounds>
@@ -152,7 +152,7 @@
<upper>0.99</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.01</lower>
<upper>0.99</upper>
</bounds>
@@ -186,7 +186,7 @@
<upper>0.99</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.01</lower>
<upper>0.99</upper>
</bounds>
@@ -220,7 +220,7 @@
<upper>0.98</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.01</lower>
<upper>0.99</upper>
</bounds>
@@ -255,7 +255,7 @@
<upper>0.99</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.01</lower>
<upper>0.99</upper>
</bounds>
@@ -289,7 +289,7 @@
<upper>0.99</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.01</lower>
<upper>0.99</upper>
</bounds>
@@ -323,7 +323,7 @@
<upper>1.0</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.0</lower>
<upper>0.95</upper>
</bounds>
@@ -357,7 +357,7 @@
<upper>0.5</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.0</lower>
<upper>0.9</upper>
</bounds>
@@ -391,7 +391,7 @@
<upper>0.5</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.0</lower>
<upper>0.5</upper>
</bounds>
@@ -425,7 +425,7 @@
<upper>1.0</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.1</lower>
<upper>0.99</upper>
</bounds>
@@ -459,7 +459,7 @@
<upper>1.0</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.01</lower>
<upper>0.99</upper>
</bounds>
@@ -493,7 +493,7 @@
<upper>0.3</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.0</lower>
<upper>0.5</upper>
</bounds>
@@ -527,7 +527,7 @@
<upper>0.1</upper>
</bounds>
<bounds>
- <type>FLAIR</type>
+ <type>FL</type>
<lower>0.0</lower>
<upper>0.10</upper>
</bounds>

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