An R package for molecular phenotype patient matchmaking.
In R, install the devtools package, and install MolPhenoMatch by install_github(“BRL-BCM/MolPhenoMatch”).
Look at the Driver Script
The driver script is called “mle.r”. It will take you across all the stages in the analysis pipeline, including:
- Data load
- Experiment Preparation
- Permutations generation
- Calculate minimum encoding length
- Calculate patient similarity, based on mutual information.