An R package for molecular endophenotype patient matchmaking.
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DESCRIPTION
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NAMESPACE
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mle.r

README.md

MolPhenoMatch

An R package for molecular phenotype patient matchmaking.

Installation

In R, install the devtools package, and install MolPhenoMatch by install_github(“BRL-BCM/MolPhenoMatch”).

Look at the Driver Script

The driver script is called “mle.r”. It will take you across all the stages in the analysis pipeline, including:

  1. Data load
  2. Experiment Preparation
  3. Permutations generation
  4. Calculate minimum encoding length
  5. Calculate patient similarity, based on mutual information.