Datasets and Interfaces for Benchmarking Heterogeneous Graph Neural Networks

Introduction

To accommodate the urgent requirement of emerging fields and the advance of Heterogeneous Graph Neural Networks (HGNNs), we build a new benchmark for two new fields: risky product detection (ICDM) and takeout recommendation (MTWM). Besides that, we establish benchmark interfaces with over 30 heterogeneous graph datasets from other fields and providea powerful and novel toolkit to research the charactertistics of graph datasets. All of the above is publicly available jusy by several codes.

Attention

This work now is deployed into utils of OpenHGNN.

Get Started

Python environment:

conda create --name hgbi python=3.7
conda activate glibrary

Install packages

pip install -r requirement.txt 

Example 1: Load risk product detection dataset (RPDD) and takeout recommendation dataset (TRD)

import utils.hgbi as hgbi
ds_node = hgbi.build_dataset(
    name = 'RPDD',task = 'node_classification')
ds_link = hgbi.build_dataset(
    name = 'TRD',task = 'link_prediction')

Example 2: Load other heterogeneous graph dataset

You can also load other graph dataset from other fields:

ds_node = hgbi.build_dataset(
    name = 'acm4NSHE',task = 'node_classification')
print(ds_node.g)

ds_link = hgbi.build_dataset(
    name = 'ohgbl-yelp2',task = 'link_prediction')
print(ds_link.g)

Example 3: Analysis and visualization

from utils.tsne_g import *
import utils.hgbi as hgbi
from utils import *
from utils.meta_path_analyse import number_meta_path

dataset = hgbi.build_dataset(
        name = 'dblp4GTN',task = 'node_classification')

plot_degree_dist(dataset.g,'./degree.png')
draw_tsne(dataset,'./sne.png')
meta_path_nums, heterophily, edge_radio  = number_meta_path(g, meta_paths_dict=dataset.meta_paths_dict, strength=2)

For more details, please refer to the "demo_*.py" files

Summary of total available heterogeneous graph datasets

Node classification

Dataset	Ntype	Node	Etype	Edge	Avg Attri	Label	Model	Original (default: Macro/Micro-F1%)	Reproduced (Macro/Micro_F1%)
acm4NSHE	3	11,246	4	34,852	128	3	NSHE	83.27/84.12	84.78/84.95
acm4HeCo	3	11,246	4	34,852	3,043	3	HeCo	89.04/88.71	88.66/88.35
acm4NARS	3	21,488	4	34,864	720	3	NARS	92.9 (Accuracy)	91.35/91.44
acm4HetGNN	3	49,708	5	202,067	387	4	HetGNN	97.8/97.9	97.01/97.05
acm4GTN	3	8,994	4	25,922	1,902	3	GTN	92.68 (F1 score)	92.03/92
dblp4MAGNN	4	26,128	6	239,566	5,601	4	SimpleHGN	93.89/94.35	86.79/86.75
imdb4MAGNN	3	11,616	4	34,212	3,468	3	MAGNN	60.43/60.63	62.85/62.78
imdb4GTN	3	12,772	4	37,288	1,256	4	GTN	60.92 (F1 score)	56.97/58.61
yelp4HeGAN	5	3,913	8	77,360	64	3	HeGAN	85.24/80.31	71.51/79.16
HGBn-ACM	4	10,942	8	547,872	1,902	3	SimpleHGN	93.2/93.12	66.64/88.4
HGBn-DBLP	4	26,128	6	239,566	1,538	4	SimpleHGN	93.77/94.35	86.31/87.24
ohgbn-Freebase	8	12,164,758	36	62,982,566	N/A	8	RGCN	N/A	53.07/69.33
ohgbn-yelp2	4	82,465	4	30,542,675	N/A	16	RGCN	5.10/23.24	5.04/40.44
ohgbn-acm	3	8,994	2	25,922	1,902	3	fastGTN	N/A	92.92/92.85
ohgbn-imdb	3	12,772	4	37,288	1,256	3	RGCN	N/A	57.57/63.66
dblp4GTN	3	18,405	4	67,946	334	4	fastGTN	94.18 (F1 score)	90.39/91.39
aifb	7	7,262	104	48,810	N/A	4	RGCN	95.83 (Accuracy)	96.92/97.22
mutag	5	27,163	50	148,100	N/A	2	RGCN	73.23 (Accuracy)	66.40/70.59
bgs	27	94,806	122	672,884	N/A	2	RGCN	83.10 (Accuracy)	88.26/89.66
am	7	1,885,136	108	5,668,682	N/A	11	RGCN	89.29 (Accuracy)	89.41/89.90
RPDD	7	13,806,619	7	157,814,864	256	2	RGCN	N/A	90.46/98.02

Link prediction

Dataset	Ntype	Node	Etype	Edge	Avg Attri	Label	Model	Paper	AUC_ROC
amazon4SLICE	1	10,099	2	170,783	1,156	2	RGCN	N/A	74.6(avg)
HGBl-ACM	4	10,942	8	547,872	1,902	1	HDE	N/A	87.41
HGBl-DBLP	4	26,128	6	239,566	1,538	1	HDE	N/A	98.36
HGBl-IMDB	4	21,420	6	86,642	3,390	1	HDE	N/A	91.51
HGBl-amazon	1	10,099	2	148,659	1,156	2	GATNE-T	N/A	80.83(avg)
HGBl-LastFM	3	20,612	6	283,042	N/A	1	RGCN	81.9	76.46
HGBl-PubMed	4	63,109	20	489,972	200	1	RGCN	88.32	89.3
ohgbl-yelp1	4	2,353,365	4	10,417,742	N/A	1	CompGCN	N/A	61.21
ohgbl-yelp2	4	82,465	4	31,206,253	N/A	1	RGCN	N/A	65.6
ohgbl-Freebase	8	12,164,755	36	63,906,230	N/A	1	RGCN	50.18	58.75
DoubanMovie	6	37,595	12	3,429,852	N/A	1	RGCN	N/A	91.55
TRD	3	408,849	4	18,931,400	N/A	1	RGCN	N/A	92.69