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Files for Getting Started

@sbooeshaghi sbooeshaghi released this
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This page provides the files needed to follow the getting started tutorial. The experiment is single-cell RNA-sequencing of mouse retinal cells SRR8599150 from this paper (

Below are the:

  • Mouse transcriptome Mus_musculus.GRCm38.cdna.all.fa.gz
  • 10x Chromium v2 chemistry barcode whitelist 10xv2_whitelist.txt
  • Mouse transcripts to genes map transcripts_to_genes.txt
  • Read 1 fastq file SRR8599150_S1_L001_R1_001.fastq.gz
  • Read 2 fastq file SRR8599150_S1_L001_R2_001.fastq.gz
  • Expected files (corrected sorted BUS file, transcripts file, equivalence class file) output.correct.sort.bus.gz transcripts.txt.gz
  • (extended explanation) Transcripts to genes utility