From c794b53df293047371761c0741c734d06d464fb4 Mon Sep 17 00:00:00 2001 From: Mike Kucera Date: Mon, 26 Feb 2018 16:29:37 -0500 Subject: [PATCH] What's new for 3.1 --- WhatsNew.rst | 40 ++++++++++++++++++++++++++++++++++++++++ index.rst | 1 + 2 files changed, 41 insertions(+) create mode 100644 WhatsNew.rst diff --git a/WhatsNew.rst b/WhatsNew.rst new file mode 100644 index 0000000..acea612 --- /dev/null +++ b/WhatsNew.rst @@ -0,0 +1,40 @@ +What's New +========== + +EnrichmentMap 3.1 +----------------- + +* Redesigned Post-Analysis UI + + * Ability to preview signature gene sets before import + * Ability to import GMT files from the web (download.baderlab.org) + +* New Chart: Color by DataSet. +* Support for `g:profiler` 2-phenotype analysis. +* Heat Map: Compress expressions by class. +* Export Legend to PDF. +* Export Heat Map to PDF. +* Ability to specify the name of the EnrichmentMap network. +* Drag-and-Drop folders onto the Create EnrichmentMap Dialog. +* `Several bug fixes `_ +* Requires Cytoscape 3.5.1 + + +EnrichmentMap 3.0 +----------------- + +EnrichmentMap 3.0 is a major release, with the following new features: + +* EnrichmentMap networks can now be created from any number of enrichment data sets + (EnrichmentMap 2.0 supported maximum 2 data sets). +* New chart visualizations on nodes for visualizing NES scores, p-values or q-values. + Three new charts are available: radial heat-map, linear heat-map and heat-strips. +* New network creation dialog has the ability to scan a folder for files belonging to each dataset. + In most cases this removes the need to manually enter the required files. +* New control panel allows the contents and style of the network and charts to be updated + dynamically. +* New legend dialog. +* New streamlined HeatMap panel has the ability to summarize expression data. +* Several new commands that allow EnrichmentMap to be automated from external scripts and CyREST. +* `Several bug fixes `_ +* Requires Cytoscape 3.4 diff --git a/index.rst b/index.rst index d5c33c2..2783617 100644 --- a/index.rst +++ b/index.rst @@ -100,6 +100,7 @@ Papers Citing Enrichment Map :caption: User Guide: Installation + WhatsNew QuickTour CreatingNetwork Network