Skip to content

BaderLab/netDx

master
Switch branches/tags
Code

Latest commit

 

Git stats

Files

Permalink
Failed to load latest commit information.
Type
Name
Latest commit message
Commit time
 
 
R
 
 
 
 
 
 
man
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 

Update: Sep 2021: netDx is now maintained at https://github.com/realpailab/netdx.

Development in this repo now frozen.

netDx is a general-purpose algorithm for building patient classifiers by using patient similarity networks as features. It excels at interpretability and handling missing data. It also allows custom grouping rules for features, notably grouping genes into pathways. It integrates with RCy3 for network visualization of predictive pathways.

As of February 2020, netDx is available via the BioConductor repository. Visit http://bioconductor.org/packages/release/bioc/html/netDx.html to install the package and see worked examples.

Contact Shraddha Pai at shraddha.pai@utoronto.ca in case of questions.

References:

  1. Pai S, Hui S, Isserlin R, Shah MA, Kaka H and GD Bader (2019). netDx: Interpretable patient classification using patient similarity networks. Mol Sys Biol. 15: e8497. Read the paper here.
  2. Pai S, Weber P, Isserlin R, Kaka H, Hui S, Shah MA, Giudice L, Giugno R, Nøhr AK, Baumbach J, GD Bader (2021). netDx: Software for building interpretable patient classifiers by multi-'omic data integration using patient similarity networks. F1000 Research. 9:1239.

About

R package with netDx software and data for examples

Resources

License

Unknown, MIT licenses found

Licenses found

Unknown
LICENSE
MIT
LICENSE.md

Stars

Watchers

Forks

Packages

No packages published