------------------------------------------------------------------------- N E X T F L O W ~ version 21.10.6 Launching `micropipe/main.nf` [serene_laplace] - revision: f37e7dd339 WARN: DSL 2 PREVIEW MODE IS DEPRECATED - USE THE STABLE VERSION INSTEAD -- Read more at https://www.nextflow.io/docs/latest/dsl2.html#dsl2-migration-notes [- ] process > assembly:porechop - [- ] process > assembly:japsa - [- ] process > assembly:flye - [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - [barcode13, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode13/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode13, 5m] [barcode13, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode13/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode13, 5m] [barcode14, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode14/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode14, 5m] [barcode14, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode14/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode14, 5m] [barcode15, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode15/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode15, 5m] [barcode15, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode15/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode15, 5m] [barcode16, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode16/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode16, 5m] [barcode16, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode16/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode16, 5m] [barcode16, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode16/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_2.fastq, barcode16, 5m] [barcode17, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode17/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode17, 5m] [barcode17, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode17/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode17, 5m] [barcode20, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode20/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode20, 5m] [barcode27, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode27/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode27, 5m] [barcode46, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode46/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode46, 5m] [barcode55, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode55/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode55, 5m] [barcode58, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode58/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode58, 5m] [barcode60, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode60/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode60, 5m] [barcode64, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode64/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode64, 5m] [barcode67, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode67/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode67, 5m] [barcode72, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode72/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode72, 5m] [barcode79, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode79/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode79, 5m] executor > local (3) [47/391336] process > assembly:porechop (barcode64) [ 0%] 0 of 21 [- ] process > assembly:japsa - [- ] process > assembly:flye - [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - [barcode13, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode13/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode13, 5m] [barcode13, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode13/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode13, 5m] [barcode14, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode14/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode14, 5m] [barcode14, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode14/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode14, 5m] [barcode15, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode15/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode15, 5m] [barcode15, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode15/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode15, 5m] [barcode16, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode16/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode16, 5m] [barcode16, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode16/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode16, 5m] [barcode16, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode16/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_2.fastq, barcode16, 5m] [barcode17, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode17/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode17, 5m] [barcode17, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode17/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode17, 5m] [barcode20, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode20/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode20, 5m] [barcode27, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode27/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode27, 5m] [barcode46, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode46/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode46, 5m] [barcode55, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode55/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode55, 5m] [barcode58, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode58/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode58, 5m] [barcode60, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode60/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode60, 5m] [barcode64, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode64/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode64, 5m] [barcode67, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode67/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode67, 5m] [barcode72, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode72/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode72, 5m] [barcode79, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode79/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode79, 5m] executor > local (3) [47/391336] process > assembly:porechop (barcode64) [ 0%] 0 of 21 [- ] process > assembly:japsa - [- ] process > assembly:flye - [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - [barcode13, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode13/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode13, 5m] [barcode13, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode13/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode13, 5m] [barcode14, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode14/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode14, 5m] [barcode14, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode14/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode14, 5m] [barcode15, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode15/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode15, 5m] [barcode15, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode15/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode15, 5m] [barcode16, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode16/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode16, 5m] [barcode16, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode16/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode16, 5m] [barcode16, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode16/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_2.fastq, barcode16, 5m] [barcode17, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode17/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode17, 5m] [barcode17, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode17/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode17, 5m] [barcode20, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode20/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode20, 5m] [barcode27, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode27/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode27, 5m] [barcode46, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode46/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode46, 5m] [barcode55, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode55/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode55, 5m] [barcode58, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode58/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode58, 5m] [barcode60, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode60/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode60, 5m] [barcode64, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode64/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode64, 5m] [barcode67, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode67/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode67, 5m] [barcode72, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode72/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode72, 5m] [barcode79, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode79/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode79, 5m] executor > local (4) [47/391336] process > assembly:porechop (barcode64) [ 4%] 1 of 21 [- ] process > assembly:japsa [ 0%] 0 of 1 [- ] process > assembly:flye - [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - [barcode13, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode13/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode13, 5m] [barcode13, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode13/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode13, 5m] [barcode14, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode14/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode14, 5m] [barcode14, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode14/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode14, 5m] [barcode15, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode15/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode15, 5m] [barcode15, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode15/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode15, 5m] [barcode16, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode16/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode16, 5m] [barcode16, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode16/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode16, 5m] [barcode16, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode16/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_2.fastq, barcode16, 5m] [barcode17, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode17/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode17, 5m] [barcode17, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode17/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode17, 5m] [barcode20, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode20/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode20, 5m] [barcode27, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode27/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode27, 5m] [barcode46, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode46/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode46, 5m] [barcode55, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode55/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode55, 5m] [barcode58, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode58/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode58, 5m] [barcode60, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode60/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode60, 5m] [barcode64, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode64/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode64, 5m] [barcode67, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode67/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode67, 5m] [barcode72, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode72/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode72, 5m] [barcode79, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode79/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode79, 5m] executor > local (7) [ab/91e2aa] process > assembly:porechop (barcode27) [ 9%] 2 of 21 [05/a8304c] process > assembly:japsa (barcode27) [ 0%] 0 of 2 [- ] process > assembly:flye - [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - [barcode13, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode13/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode13, 5m] [barcode13, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode13/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode13, 5m] [barcode14, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode14/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode14, 5m] [barcode14, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode14/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode14, 5m] [barcode15, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode15/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode15, 5m] [barcode15, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode15/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode15, 5m] [barcode16, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode16/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode16, 5m] [barcode16, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode16/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode16, 5m] [barcode16, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode16/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_2.fastq, barcode16, 5m] [barcode17, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode17/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode17, 5m] [barcode17, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode17/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode17, 5m] [barcode20, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode20/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode20, 5m] [barcode27, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode27/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode27, 5m] [barcode46, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode46/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode46, 5m] [barcode55, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode55/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode55, 5m] [barcode58, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode58/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode58, 5m] [barcode60, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode60/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode60, 5m] [barcode64, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode64/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode64, 5m] [barcode67, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode67/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode67, 5m] [barcode72, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode72/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode72, 5m] [barcode79, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode79/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode79, 5m] executor > local (7) [ab/91e2aa] process > assembly:porechop (barcode27) [ 9%] 2 of 21 [05/a8304c] process > assembly:japsa (barcode27) [ 0%] 0 of 2 [- ] process > assembly:flye - [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - [barcode13, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode13/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode13, 5m] [barcode13, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode13/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode13, 5m] [barcode14, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode14/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode14, 5m] [barcode14, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode14/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode14, 5m] [barcode15, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode15/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode15, 5m] [barcode15, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode15/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode15, 5m] [barcode16, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode16/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode16, 5m] [barcode16, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode16/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode16, 5m] [barcode16, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode16/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_2.fastq, barcode16, 5m] [barcode17, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode17/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode17, 5m] [barcode17, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode17/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode17, 5m] [barcode20, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode20/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode20, 5m] [barcode27, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode27/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode27, 5m] [barcode46, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode46/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode46, 5m] [barcode55, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode55/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode55, 5m] [barcode58, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode58/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode58, 5m] [barcode60, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode60/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode60, 5m] [barcode64, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode64/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode64, 5m] [barcode67, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode67/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode67, 5m] [barcode72, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode72/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode72, 5m] [barcode79, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode79/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode79, 5m] executor > local (7) [ab/91e2aa] process > assembly:porechop (barcode27) [ 9%] 2 of 21 [52/5bf302] process > assembly:japsa (barcode64) [100%] 2 of 2 [- ] process > assembly:flye [ 0%] 0 of 2 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - [barcode13, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode13/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode13, 5m] [barcode13, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode13/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode13, 5m] [barcode14, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode14/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode14, 5m] [barcode14, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode14/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode14, 5m] [barcode15, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode15/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode15, 5m] [barcode15, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode15/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode15, 5m] [barcode16, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode16/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode16, 5m] [barcode16, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode16/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode16, 5m] [barcode16, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode16/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_2.fastq, barcode16, 5m] [barcode17, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode17/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode17, 5m] [barcode17, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode17/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_1.fastq, barcode17, 5m] [barcode20, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode20/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode20, 5m] [barcode27, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode27/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode27, 5m] [barcode46, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode46/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode46, 5m] [barcode55, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode55/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode55, 5m] [barcode58, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode58/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode58, 5m] [barcode60, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode60/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode60, 5m] [barcode64, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode64/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode64, 5m] [barcode67, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode67/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode67, 5m] [barcode72, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode72/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode72, 5m] [barcode79, /scicomp/home-pure/suj7/demux_guppy_fastq/barcode79/fastq_runid_5363c81269c5ff44cc45e657b79b1135be0297cb_0.fastq, barcode79, 5m] executor > local (9) [2a/4906e5] process > assembly:porechop (barcode58) [ 14%] 3 of 21 [1b/0a3ca6] process > assembly:japsa (barcode13) [ 66%] 2 of 3 [- ] process > assembly:flye [ 0%] 0 of 2 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (11) [ee/8d9b51] process > assembly:porechop (barcode20) [ 19%] 4 of 21 [a0/1422de] process > assembly:japsa (barcode58) [ 50%] 2 of 4 [- ] process > assembly:flye [ 0%] 0 of 2 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (11) [ee/8d9b51] process > assembly:porechop (barcode20) [ 19%] 4 of 21 [a0/1422de] process > assembly:japsa (barcode58) [ 75%] 3 of 4 [- ] process > assembly:flye [ 0%] 0 of 3 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (13) [ee/8d9b51] process > assembly:porechop (barcode20) [ 23%] 5 of 21 [c7/d22847] process > assembly:japsa (barcode20) [ 60%] 3 of 5 [- ] process > assembly:flye [ 0%] 0 of 3 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (13) [ee/8d9b51] process > assembly:porechop (barcode20) [ 23%] 5 of 21 [c7/d22847] process > assembly:japsa (barcode20) [ 80%] 4 of 5 [- ] process > assembly:flye [ 0%] 0 of 4 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (13) [ee/8d9b51] process > assembly:porechop (barcode20) [ 23%] 5 of 21 [1b/0a3ca6] process > assembly:japsa (barcode13) [100%] 5 of 5 [- ] process > assembly:flye [ 0%] 0 of 5 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (15) [b8/45f85b] process > assembly:porechop (barcode55) [ 28%] 6 of 21 [e4/289ef8] process > assembly:japsa (barcode55) [ 83%] 5 of 6 [- ] process > assembly:flye [ 0%] 0 of 5 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (15) [b8/45f85b] process > assembly:porechop (barcode55) [ 28%] 6 of 21 [e4/289ef8] process > assembly:japsa (barcode55) [100%] 6 of 6 [- ] process > assembly:flye [ 0%] 0 of 6 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (16) [d3/66feff] process > assembly:porechop (barcode67) [ 33%] 7 of 21 [e4/289ef8] process > assembly:japsa (barcode55) [ 85%] 6 of 7 [- ] process > assembly:flye [ 0%] 0 of 6 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (17) [d3/66feff] process > assembly:porechop (barcode67) [ 33%] 7 of 21 [db/44f278] process > assembly:japsa (barcode15) [ 85%] 6 of 7 [- ] process > assembly:flye [ 0%] 0 of 6 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (19) [aa/698e10] process > assembly:porechop (barcode16) [ 38%] 8 of 21 [3d/26103f] process > assembly:japsa (barcode67) [ 75%] 6 of 8 [- ] process > assembly:flye [ 0%] 0 of 6 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (19) [aa/698e10] process > assembly:porechop (barcode16) [ 38%] 8 of 21 [3d/26103f] process > assembly:japsa (barcode67) [ 87%] 7 of 8 [- ] process > assembly:flye [ 0%] 0 of 7 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (19) [aa/698e10] process > assembly:porechop (barcode16) [ 38%] 8 of 21 [db/44f278] process > assembly:japsa (barcode15) [100%] 8 of 8 [- ] process > assembly:flye [ 0%] 0 of 8 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (21) [74/9ce28b] process > assembly:porechop (barcode14) [ 42%] 9 of 21 [9d/19ced3] process > assembly:japsa (barcode14) [ 88%] 8 of 9 [- ] process > assembly:flye [ 0%] 0 of 8 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (21) [74/9ce28b] process > assembly:porechop (barcode14) [ 42%] 9 of 21 [9d/19ced3] process > assembly:japsa (barcode14) [100%] 9 of 9 [- ] process > assembly:flye [ 0%] 0 of 9 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (23) [f1/436e4a] process > assembly:porechop (barcode16) [ 47%] 10 of 21 [79/c6ef0f] process > assembly:japsa (barcode14) [ 90%] 9 of 10 [- ] process > assembly:flye [ 0%] 0 of 9 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (23) [f1/436e4a] process > assembly:porechop (barcode16) [ 47%] 10 of 21 [79/c6ef0f] process > assembly:japsa (barcode14) [ 90%] 9 of 10 [- ] process > assembly:flye [ 0%] 0 of 9 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (23) [f1/436e4a] process > assembly:porechop (barcode16) [ 47%] 10 of 21 [79/c6ef0f] process > assembly:japsa (barcode14) [100%] 10 of 10 [- ] process > assembly:flye [ 0%] 0 of 10 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (25) [ac/23e09e] process > assembly:porechop (barcode15) [ 52%] 11 of 21 [90/091e5d] process > assembly:japsa (barcode13) [ 90%] 10 of 11 [- ] process > assembly:flye [ 0%] 0 of 10 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (25) [ac/23e09e] process > assembly:porechop (barcode15) [ 52%] 11 of 21 [90/091e5d] process > assembly:japsa (barcode13) [ 90%] 10 of 11 [- ] process > assembly:flye [ 0%] 0 of 10 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (27) [8d/378c07] process > assembly:porechop (barcode60) [ 57%] 12 of 21 [ac/319fc5] process > assembly:japsa (barcode16) [ 83%] 10 of 12 [- ] process > assembly:flye [ 0%] 0 of 10 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (29) [e1/8c7279] process > assembly:porechop (barcode17) [ 61%] 13 of 21 [cf/3eb703] process > assembly:japsa (barcode15) [ 76%] 10 of 13 [- ] process > assembly:flye [ 0%] 0 of 10 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (31) [22/b7e6bc] process > assembly:porechop (barcode16) [ 66%] 14 of 21 [59/c1e95f] process > assembly:japsa (barcode60) [ 71%] 10 of 14 [- ] process > assembly:flye [ 0%] 0 of 10 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (31) [22/b7e6bc] process > assembly:porechop (barcode16) [ 66%] 14 of 21 [cf/3eb703] process > assembly:japsa (barcode15) [ 78%] 11 of 14 [- ] process > assembly:flye [ 0%] 0 of 11 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (31) [22/b7e6bc] process > assembly:porechop (barcode16) [ 66%] 14 of 21 [59/c1e95f] process > assembly:japsa (barcode60) [ 85%] 12 of 14 [- ] process > assembly:flye [ 0%] 0 of 12 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (31) [22/b7e6bc] process > assembly:porechop (barcode16) [ 66%] 14 of 21 [90/091e5d] process > assembly:japsa (barcode13) [ 92%] 13 of 14 [- ] process > assembly:flye [ 0%] 0 of 13 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (31) [22/b7e6bc] process > assembly:porechop (barcode16) [ 66%] 14 of 21 [ac/319fc5] process > assembly:japsa (barcode16) [100%] 14 of 14 [- ] process > assembly:flye [ 0%] 0 of 14 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (33) [6e/041965] process > assembly:porechop (barcode46) [ 71%] 15 of 21 [f4/2be714] process > assembly:japsa (barcode16) [ 93%] 14 of 15 [- ] process > assembly:flye [ 0%] 0 of 14 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (35) [6e/041965] process > assembly:porechop (barcode46) [ 76%] 16 of 21 [28/5b7691] process > assembly:japsa (barcode46) [ 87%] 14 of 16 [- ] process > assembly:flye [ 0%] 0 of 14 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (35) [6e/041965] process > assembly:porechop (barcode46) [ 76%] 16 of 21 [28/5b7691] process > assembly:japsa (barcode46) [ 93%] 15 of 16 [- ] process > assembly:flye [ 0%] 0 of 15 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (37) [6b/bfcdff] process > assembly:porechop (barcode17) [ 80%] 17 of 21 [e3/e335cb] process > assembly:japsa (barcode72) [ 88%] 15 of 17 [- ] process > assembly:flye [ 0%] 0 of 15 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (37) [6b/bfcdff] process > assembly:porechop (barcode17) [ 80%] 17 of 21 [e3/e335cb] process > assembly:japsa (barcode72) [ 94%] 16 of 17 [- ] process > assembly:flye [ 0%] 0 of 16 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (37) [6b/bfcdff] process > assembly:porechop (barcode17) [ 80%] 17 of 21 [f4/2be714] process > assembly:japsa (barcode16) [100%] 17 of 17 [- ] process > assembly:flye [ 0%] 0 of 17 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (39) [97/e17cf0] process > assembly:porechop (barcode79) [ 85%] 18 of 21 [ff/c0c4cf] process > assembly:japsa (barcode17) [ 94%] 17 of 18 [- ] process > assembly:flye [ 0%] 0 of 17 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (41) [97/e17cf0] process > assembly:porechop (barcode79) [ 90%] 19 of 21 [03/192ea8] process > assembly:japsa (barcode79) [ 89%] 17 of 19 [e7/a37752] process > assembly:flye (barcode64) [ 0%] 0 of 17 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (41) [97/e17cf0] process > assembly:porechop (barcode79) [ 90%] 19 of 21 [03/192ea8] process > assembly:japsa (barcode79) [ 94%] 18 of 19 [e7/a37752] process > assembly:flye (barcode64) [ 0%] 0 of 18 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (43) [22/b7e6bc] process > assembly:porechop (barcode16) [ 95%] 20 of 21 [56/c24878] process > assembly:japsa (barcode16) [ 90%] 18 of 20 [5b/7f8a46] process > assembly:flye (barcode27) [ 0%] 0 of 18 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - executor > local (44) [22/b7e6bc] process > assembly:porechop (barcode16) [ 95%] 20 of 21 [56/c24878] process > assembly:japsa (barcode16) [ 90%] 18 of 20 [6e/a7a9f9] process > assembly:flye (barcode58) [ 0%] 0 of 18 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - Error executing process > 'assembly:flye (barcode64)' Caused by: Missing output file(s) `assembly.fasta` expected by process `assembly:flye (barcode64)` Command executed: set +eu flye --nano-hq filtered.fastq.gz --genome-size 5m --threads 4 --out-dir $PWD --min-overlap 1700 --asm-coverage 50 flye -v 2> flye_version.txt Command exit status: 0 Command output: (empty) Command error: WARNING: Skipping mount /usr/local/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container usage: flye (--pacbio-raw | --pacbio-corr | --nano-raw | --nano-corr | --subassemblies) file1 [file_2 ...] --genome-size SIZE --out-dir PATH [--threads int] [--iterations int] [--min-overlap int] [--meta] [--plasmids] [--no-trestle] [--polish-target] [--debug] [--version] [--help] [--resume] [--resume-from] [--stop-after] flye: error: one of the arguments --pacbio-raw --pacbio-corr --nano-raw --nano-corr --subassemblies is required Work dir: /scicomp/home-pure/suj7/work/e7/a3775237509a5acf42c70482d14836 Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run` WARN: Killing pending tasks (5) executor > local (44) [6b/bfcdff] process > assembly:porechop (barcode17) [100%] 20 of 20 [56/c24878] process > assembly:japsa (barcode16) [100%] 18 of 18 [6e/a7a9f9] process > assembly:flye (barcode58) [ 6%] 1 of 16, failed: 1 [- ] process > assembly:racon_cpu - [- ] process > assembly:medaka_cpu - [- ] process > assembly:fixstart_LR - [- ] process > assembly:quast - Error executing process > 'assembly:flye (barcode64)' Caused by: Missing output file(s) `assembly.fasta` expected by process `assembly:flye (barcode64)` Command executed: set +eu flye --nano-hq filtered.fastq.gz --genome-size 5m --threads 4 --out-dir $PWD --min-overlap 1700 --asm-coverage 50 flye -v 2> flye_version.txt Command exit status: 0 Command output: (empty) Command error: WARNING: Skipping mount /usr/local/var/singularity/mnt/session/etc/resolv.conf [files]: /etc/resolv.conf doesn't exist in container usage: flye (--pacbio-raw | --pacbio-corr | --nano-raw | --nano-corr | --subassemblies) file1 [file_2 ...] --genome-size SIZE --out-dir PATH [--threads int] [--iterations int] [--min-overlap int] [--meta] [--plasmids] [--no-trestle] [--polish-target] [--debug] [--version] [--help] [--resume] [--resume-from] [--stop-after] flye: error: one of the arguments --pacbio-raw --pacbio-corr --nano-raw --nano-corr --subassemblies is required Work dir: /scicomp/home-pure/suj7/work/e7/a3775237509a5acf42c70482d14836 Tip: you can replicate the issue by changing to the process work dir and entering the command `bash .command.run`